assemblies:assemblies
Table of Contents
Assemblies
2015
Nuclear
| Contributing team | Contig N50 | Scaffold N50 | Total bases | Location |
| SOAP: Team 2 page | 8,033 | 11,000 | 2,293,889,058 | http://genome-test.cse.ucsc.edu/~charles/BME235_backup/Assemblies/2015/SOAPdenovo2/SOAPdenovo2_run3_all/soapdenovo2_allAssembly_1.scafSeq.gapclosed |
| ABySS: Team 4 page | 2,669 | 3,063 | 2,446,362,204 | http://genome-test.cse.ucsc.edu/~charles/BME235_backup/Assemblies/2015/abyss/slug-scaffolds.fa |
| Discovar de novo: Team 5 page | 10,427 | 12,549 | 2,395,797,282 | http://genome-test.cse.ucsc.edu/~charles/BME235_backup/Assemblies/2015/DiscovarDeNovo/KolossusAssembly/discovarDeNovoKolossusAssembly.fasta |
Mitochondrion
Natasha Dudek (Discovar de novo) re-assembled the mitochondrion in 2015.
| Contributing team | Contig N50 | Scaffold N50 | Total bases | Location |
| Discovar de novo: Team 5 page | 9,030 | 9,030 | 15,548 | http://genome-test.cse.ucsc.edu/~charles/BME235_backup/Data/2015/mitochondrion/mitochondrion_SW018-9_discovar.fasta |
Repetitive Elements
| Contributing team | Contig N50 | Scaffold N50 | Total bases | Location |
| Charles Cole | 29 | 29 | 19,510,691 | campusrocks.ucsc.edu:/campusdata/BME235/S15_assemblies/RepArk/Banana_Slug_Repetitive_elements_without_UCSF/velvet_repeat_lib/contigs.fa |
2011
Mitochondrion
Kevin Karplus attempted a mitochondrion assembly in 2012 using the data he had previously gathered.
| Contributing team | Contig N50 | Scaffold N50 | Total bases | Location |
| Kevin Karplus | mitochondrion-draft2.fasta.gz |
2010
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assemblies/assemblies.txt · Last modified: 2015/08/19 20:14 by chkcole
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