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--- post-assembly_analysis:banana_slug_genome_browser [2015/05/15 19:23]
ceisenhart
+++ post-assembly_analysis:banana_slug_genome_browser [2015/05/27 20:25]
ceisenhart
@@ Line 4: / Line 4: @@
 http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt
-The data on the browser is in a VERY EARLY FORMAT. Currently only the 30 longest contig's for each group are supported on the browser.  The contigs are re-named before uploading, and can be viewed by using the 'sequences' button on the browser. Contact Chris Eisenhart to have your team's data put on the browser (ceisenhart@soe.ucsc.edu). Currently there is data on the banana slug hub for the following teams;
+The entire Ariolimax dolichophallus mitochondrial genome seems to be up on the browser in three contigs! Hopefully tracks will be made soon.
+The default contig names are often wrong, the correct names can be viewed by using the 'sequences' button on the browser. Contact Chris Eisenhart to have your team's data put on the browser (ceisenhart@soe.ucsc.edu). Currently the following assemblies are supported;
+ABySS
 SOAP
 Discovar //de novo//
+Mitochondrial
 ==== Setup and viewing ====
+To setup a track hub follow the instructions here, the banana slug track hub has already been created. To view it skip to the next section.
+https://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html
 To view the banana slug data please go to

Banana Slug Genomics