User Tools

Site Tools


post-assembly_analysis:banana_slug_genome_browser

This is an old revision of the document!


Banana slug genome browser

Currently the banana slug genome is supported as a private track hub.

http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt

The entire Ariolimax dolichophallus mitochondrial genome seems to be up on the browser in three contigs! Hopefully tracks will be made soon.

The default contig names are often wrong, the correct names can be viewed by using the 'sequences' button on the browser. Contact Chris Eisenhart to have your team's data put on the browser (ceisenhart@soe.ucsc.edu). Currently the following assemblies are supported;

ABySS

SOAP

Discovar de novo

Mitochondrial

Setup and viewing

To setup a track hub follow the instructions here, the banana slug track hub has already been created. To view it skip to the next section.

https://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html

To view the banana slug data please go to

https://genome.ucsc.edu/cgi-bin/hgGateway

and click the 'track hubs' button

next navigate to the 'my hubs' tab

Paste the url provided,

http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt

into the 'URL' text box and click the 'Add hub' button. You will be redirected to the banana slug hub.

You could leave a comment if you were logged in.
post-assembly_analysis/banana_slug_genome_browser.1432758328.txt.gz · Last modified: 2015/05/27 13:25 by ceisenhart