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post-assembly_analysis:banana_slug_genome_browser

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Banana slug genome browser

Currently the banana slug genome is supported as a private track hub.

http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt

The data on the browser is in a VERY EARLY FORMAT. Currently only the 30 longest contig's for each group are supported on the browser. The contigs are re-named before uploading, and can be viewed by using the 'sequences' button on the browser. Contact Chris Eisenhart to have your team's data put on the browser (ceisenhart@soe.ucsc.edu). Currently there is data on the banana slug hub for the following teams;

SOAP

Discovar de novo

Setup and viewing

To view the banana slug data please go to

https://genome.ucsc.edu/cgi-bin/hgGateway

and click the 'track hubs' button

next navigate to the 'my hubs' tab

Paste the url provided,

http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt

into the 'URL' text box and click the 'Add hub' button. You will be redirected to the banana slug hub.

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post-assembly_analysis/banana_slug_genome_browser.1431717788.txt.gz · Last modified: 2015/05/15 12:23 by ceisenhart