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lecture_notes:05-27-2011 [2011/05/27 22:19] eyliaw |
lecture_notes:05-27-2011 [2011/05/28 03:25] karplus mapping 454_run3 not needed. |
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- | * Find out which lanes in 454 run 3 are banana slug runs. | + | * Find out which lanes in 454 run 3 are banana slug runs. But it turns out that this is not necessary: run "3" is not a separate run, but just run2 plus the non-banana-slug reads in other lanes. |
* Try mapping with Newbler or BWA. | * Try mapping with Newbler or BWA. | ||
* BLAST/BLAT it. | * BLAST/BLAT it. |