This is an old revision of the document!
To Do
We went over some things that need updating in the wiki and plans for this weekend.
Document scripts added in
bin folder.
Find out which lanes in 454 run 3 are banana slug runs. But it turns out that this is not necessary: run “3” is not a separate run, but just run2 plus the non-banana-slug reads in other lanes.
Find insert lengths for the SeqPrep + Quake corrected Illumina data.
SOAPdenovo assembly try 1:
try 2:
try 3:
# If insert length is negative, don't treat them as PE reads.
Newbler assemblies.
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