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====== To Do ====== We went over some things that need updating in the wiki and plans for this weekend. * Document scripts added in [[computer_resources:bin|bin]] folder. * Find out which lanes in 454 run 3 are banana slug runs. * Try mapping with Newbler or BWA. * BLAST/BLAT it. * Find insert lengths for the SeqPrep + Quake corrected Illumina data. * SOAPdenovo assembly try 1: * Only on Illumina data. * try 2: * Rank 1: All Illumina data for contig building. * Rank 2: 454 data for scaffolding. * try 3: * Illumina + 454 data as rank 1. * # If insert length is negative, don't treat them as PE reads. * Newbler assemblies. * Take another look at Barcode of Life mapping: [[http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi#SG5|Invertebrate mitochondrial translation table]] * Ed presenting paper on Wednesday. Get paper over the weekend.