We went over some things that need updating in the wiki and plans for this weekend.

• Document scripts added in bin folder.

• Find out which lanes in 454 run 3 are banana slug runs.
  • Try mapping with Newbler or BWA.
  • BLAST/BLAT it.
• Find insert lengths for the SeqPrep + Quake corrected Illumina data.
• SOAPdenovo assembly try 1:
  • Only on Illumina data.
• try 2:
  • Rank 1: All Illumina data for contig building.
  • Rank 2: 454 data for scaffolding.
• try 3:
  • Illumina + 454 data as rank 1.
• # If insert length is negative, don't treat them as PE reads.
• Newbler assemblies.
• Take another look at Barcode of Life mapping: Invertebrate mitochondrial translation table

• Ed presenting paper on Wednesday. Get paper over the weekend.