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lecture_notes:05-27-2011 [2011/05/27 21:35] eyliaw |
lecture_notes:05-27-2011 [2011/05/27 21:38] eyliaw |
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* BLAST/BLAT it. | * BLAST/BLAT it. | ||
* SOAPdenovo assembly try 1: | * SOAPdenovo assembly try 1: | ||
- | * Only on Illumina data | + | * Only on Illumina data as level 3 |
* try 2: | * try 2: | ||
- | * Level 1: All Illumina data for contig building. | + | * Level 3: All Illumina data for contig building. |
* Level 2: 454 data for scaffolding. | * Level 2: 454 data for scaffolding. | ||
* Find insert lengths for the Quake corrected Illumina data. | * Find insert lengths for the Quake corrected Illumina data. |