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====== To Do ====== We went over some things that need updating in the wiki and plans for this weekend. * Document scripts added in [[computer_resources:bin|bin]] folder. * Find out which lanes in 454 run 3 are banana slug runs. * Try mapping with Newbler or BWA. * BLAST/BLAT it. * SOAPdenovo assembly try 1: * Only on Illumina data * try 2: * Level 1: All Illumina data for contig building. * Level 2: 454 data for scaffolding. * Find insert lengths for the Quake corrected Illumina data.