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This is an old revision of the document!

To Do

We went over some things that need updating in the wiki and plans for this weekend.

  • Document scripts added in bin folder.
  • Find out which lanes in 454 run 3 are banana slug runs.
    • Try mapping with Newbler or BWA.
    • BLAST/BLAT it.
  • SOAPdenovo assembly try 1:
    • Only on Illumina data as level 3
  • try 2:
    • Level 3: All Illumina data for contig building.
    • Level 2: 454 data for scaffolding.
  • Find insert lengths for the Quake corrected Illumina data.
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lecture_notes/05-27-2011.1306532318.txt.gz · Last modified: 2011/05/27 14:38 by eyliaw