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contributors:team_2:run2

Run 2 contig/scaffold statistics

Information for assembly Scaffold 'soapdenovo2_sparseGraph.scafSeq'.(cut_off_length < 100bp)

Size_includeN 2385757551
Size_withoutN 1966097910
Scaffold_Num 1702922
Mean_Size 1400
Median_Size 127
Longest_Seq 103808
Shortest_Seq 100
Singleton_Num 1348542
Average_length_of_break(N)_in_scaffold 246
Known_genome_size NaN
Total_scaffold_length_as_percentage_of_known_genome_size NaN
scaffolds>100 1669049 98.01%
scaffolds>500 381651 22.41%
scaffolds>1K 316768 18.60%
scaffolds>10K 67694 3.98%
scaffolds>100K 2 0.00%
scaffolds>1M 0 0.00%
Nucleotide_A 584441943 24.50%
Nucleotide_C 408838898 17.14%
Nucleotide_G 401018398 16.81%
Nucleotide_T 571798671 23.97%
GapContent_N 419659641 17.59%
Non_ACGTN 0 0.00%
GC_Content 41.19% (G+C)/(A+C+G+T)
N10 25369 7250
N20 18795 18322
N30 14807 32691
N40 11893 50718
N50 9501 73185
N60 7401 101632
N70 5469 139040
N80 3520 192876
N90 1215 299499
NG50 NaN NaN
N50_scaffold-NG50_scaffold_length_difference NaN

Information for assembly Contig 'soapdenovo2_sparseGraph.contig'.(cut_off_length < 100bp)

Size_includeN 2051284322
Size_withoutN 2051284322
Contig_Num 3854447
Mean_Size 532
Median_Size 171
Longest_Seq 22512
Shortest_Seq 100
Contig>100 3819161 99.08%
Contig>500 981023 25.45%
Contig>1K 583666 15.14%
Contig>10K 891 0.02%
Contig>100K 0 0.00%
Contig>1M 0 0.00%
Nucleotide_A 616184147 30.04%
Nucleotide_C 432139689 21.07%
Nucleotide_G 415266192 20.24%
Nucleotide_T 587694294 28.65%
GapContent_N 0 0.00%
Non_ACGTN 0 0.00%
GC_Content 41.31% (G+C)/(A+C+G+T)
N10 4397 35096
N20 3142 91070
N30 2400 166135
N40 1860 263464
N50 1425 389531
N60 1048 557236
N70 694 796146
N80 335 1214116
N90 149 2184200
NG50 NaN NaN
N50_contig-NG50_contig_length_difference NaN
Number_of_contigs_in_scaffolds 2505905
Number_of_contigs_not_in_scaffolds(Singleton) 1348542
Average_number_of_contigs_per_scaffold 7.1
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contributors/team_2/run2.txt · Last modified: 2015/09/02 09:19 by ceisenhart