Banana Slug Genomics

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==== Run 2 contig/scaffold statistics ====

=== Information for assembly Scaffold 'soapdenovo2_sparseGraph.scafSeq'.(cut_off_length < 100bp) ===

| Size_includeN | 2385757551 |
| Size_withoutN | 1966097910 |
| Scaffold_Num | 1702922 |
| Mean_Size | 1400 |
| Median_Size | 127 |
| Longest_Seq | 103808 |
| Shortest_Seq | 100 |
| Singleton_Num | 1348542 |
| Average_length_of_break(N)_in_scaffold | 246 |
| Known_genome_size | NaN |
| Total_scaffold_length_as_percentage_of_known_genome_size | NaN |

| scaffolds>100 | 1669049 | 98.01% |
| scaffolds>500 | 381651 | 22.41% |
| scaffolds>1K | 316768 | 18.60% |
| scaffolds>10K | 67694 | 3.98% |
| scaffolds>100K | 2 | 0.00% |
| scaffolds>1M | 0 | 0.00% |

| Nucleotide_A | 584441943 | 24.50% |
| Nucleotide_C | 408838898 | 17.14% |
| Nucleotide_G | 401018398 | 16.81% |
| Nucleotide_T | 571798671 | 23.97% |
| GapContent_N | 419659641 | 17.59% |
| Non_ACGTN | 0 | 0.00% |
| GC_Content | 41.19% |	(G+C)/(A+C+G+T) |

| N10 | 25369 | 7250 |
| N20 | 18795 | 18322 |
| N30 | 14807 | 32691 |
| N40 | 11893 | 50718 |
| N50 | 9501 | 73185 |
| N60 | 7401 | 101632 |
| N70 | 5469 | 139040 |
| N80 | 3520 | 192876 |
| N90 | 1215 | 299499 |

| NG50 | NaN | NaN |
| N50_scaffold-NG50_scaffold_length_difference | NaN |

=== Information for assembly Contig 'soapdenovo2_sparseGraph.contig'.(cut_off_length < 100bp) ===

| Size_includeN | 2051284322 |
| Size_withoutN | 2051284322 |
| Contig_Num | 3854447 |
| Mean_Size | 532 |
| Median_Size | 171 |
| Longest_Seq | 22512 |
| Shortest_Seq | 100 |

| Contig>100 | 3819161 | 99.08% |
| Contig>500 | 981023 | 25.45% |
| Contig>1K | 583666 | 15.14% |
| Contig>10K | 891 | 0.02% |
| Contig>100K | 0 | 0.00% |
| Contig>1M | 0 | 0.00% |

| Nucleotide_A | 616184147 | 30.04% |
| Nucleotide_C | 432139689 | 21.07% |
| Nucleotide_G | 415266192 | 20.24% |
| Nucleotide_T | 587694294 | 28.65% |
| GapContent_N | 0 | 0.00% |
| Non_ACGTN | 0 | 0.00% |
| GC_Content | 41.31% | (G+C)/(A+C+G+T) |

| N10 | 4397 | 35096 |
| N20 | 3142 | 91070 |
| N30 | 2400 | 166135 |
| N40 | 1860 | 263464 |
| N50 | 1425 | 389531 |
| N60 | 1048 | 557236 |
| N70 | 694 | 796146 |
| N80 | 335 | 1214116 |
| N90 | 149 | 2184200 |

| NG50 | NaN | NaN |
| N50_contig-NG50_contig_length_difference | NaN |

| Number_of_contigs_in_scaffolds | 2505905 |
| Number_of_contigs_not_in_scaffolds(Singleton) | 1348542 |
| Average_number_of_contigs_per_scaffold | 7.1 |
Banana Slug Genomics

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