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start [2015/07/15 17:19] ceisenhart [Assemblies] |
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| - | ===== Raw data ===== | + | ===== Data ===== |
| - | Data overview page | + | [[Data overview | Access to the raw and processed data]] |
| ===== About the class ===== | ===== About the class ===== | ||
| - | About the class | + | [[About the class | A more detailed look at the class, students, and teachers ]] |
| - | Team pages | + | [[Teams | Pages for each assembly team ]] |
| - | Budget | + | [[Budget | The budget for our project. Currently we **are not** accepting donations. ]] |
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| [[mitochondrion_2015 | 2015 Mitochondrion assembly ]] | [[mitochondrion_2015 | 2015 Mitochondrion assembly ]] | ||
| - | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. The assemblies are in the /campusdata/BME235/S15_assemblies/ folder on the campusrocks server. | + | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. |
| - | | Team page | Contig N50 | Scaffold N50 | Total bases | Path | | + | |
| - | |[[team_1_page| Meraculous: Team 1 page]]| N/A | N/A | N/A | N/A | | + | |
| - | |[[soapdenovo2|SOAP: Team 2 page]]| 8,033 | 11,000 | 2,293,889,058 (non gap approx) | SOAPdenovo2/assemblyTask/SOAPdenovo2_run3_all/soapdenovo2_allAssembly_1.scafSeq.gapclosed| | + | |
| - | |[[0.10.13|SGA: Team 3 page]]| N/A | N/A | N/A | N/A | | + | |
| - | |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | 2,446,362,204| | + | |
| - | |[[team_5_page| Discovar de novo: Team 5 page]]| 10,427 | 12,549 | 2,395,797,282 | DiscovarDeNovo/KolossusAssembly/discovarDeNovoKolossusAssembly.fasta | | + | |
start.txt · Last modified: 2015/10/07 03:14 by karplus
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