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post-assembly_analysis:banana_slug_genome_browser

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=====Banana slug genome browser===== Currently the banana slug genome is supported as a private track hub. http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt The entire Ariolimax dolichophallus mitochondrial genome seems to be up on the browser in three contigs! Hopefully tracks will be made soon. The data on the browser is in a VERY EARLY FORMAT. Currently only the 30 longest contig's for each group are supported on the browser. The contigs are re-named before uploading, and can be viewed by using the 'sequences' button on the browser. Contact Chris Eisenhart to have your team's data put on the browser (ceisenhart@soe.ucsc.edu). Currently the following assemblies are supported; ABySS SOAP Discovar //de novo// Mitochondrial ==== Setup and viewing ==== To setup a track hub follow the instructions here, the banana slug track hub has already been created. To view it skip to the next section. https://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html To view the banana slug data please go to https://genome.ucsc.edu/cgi-bin/hgGateway and click the 'track hubs' button {{ ::firstbrowsershot.png |}} next navigate to the 'my hubs' tab {{ ::secondbrowsershot.png |}} Paste the url provided, http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt into the 'URL' text box and click the 'Add hub' button. You will be redirected to the banana slug hub.

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post-assembly_analysis/banana_slug_genome_browser.1432758279.txt.gz · Last modified: 2015/05/27 20:24 by ceisenhart