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post-assembly_analysis:banana_slug_genome_browser [2010/03/30 19:07]
galt created
post-assembly_analysis:banana_slug_genome_browser [2015/07/27 23:05] (current)
ceisenhart ↷ Page moved from banana_slug_genome_browser to post-assembly_analysis:banana_slug_genome_browser
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-  ​[[http://bananadev.cse.ucsc.edu/​|Banana Slug Genome Browser]] will have a UCSC genome ​browseronce we get to the point of having few enough contigs that building ​browser makes sense.+======Banana slug genome browser====== 
 +Currently the banana slug genome is supported as a private track hub. For those who know how to set up custom track hubs, the link is here. **If it is your first time setting up a custom track hub, follow the instructions for '​Mounting the banana slug track hub' below!** 
 + 
 +http://hgwdev-ceisenhart.cse.ucsc.edu/​~ceisenhart/​hubs/​bananaSlug/​hub.txt 
 + 
 +Currently the following assemblies are supported;​ 
 + 
 +ABySS 
 + 
 +SOAP 
 + 
 +Discovar //de novo//  
 + 
 +Mitochondrial  
 + 
 + 
 +===== Mounting the banana slug track hub ===== 
 +To view the banana slug data please go to  
 + 
 +https://genome.ucsc.edu/​cgi-bin/​hgGateway 
 + 
 +and click the 'track hubs' button  
 + 
 +{{ ::​firstbrowsershot.png |}} 
 + 
 +next navigate to the 'my hubs' tab  
 + 
 +{{ ::​secondbrowsershot.png |}} 
 + 
 +Paste the url provided 
 + 
 +http://​hgwdev-ceisenhart.cse.ucsc.edu/​~ceisenhart/​hubs/​bananaSlug/​hub.txt 
 + 
 +into the '​URL'​ text box and click the 'Add hub' button. ​ You will be redirected ​to the banana slug hub which can be used as normal.  
 + 
 +=====Creating ​new track hub===== 
 +To setup a custom track hub follow the instructions here.  
 + 
 +**Note the banana slug track hub has already been created.** These are the instructions that were used to create it the first time, it can be accessed using the instructions above.  
 + 
 +https://​genome.ucsc.edu/​goldenPath/​help/​hgTrackHubHelp.html 
 + 
post-assembly_analysis/banana_slug_genome_browser.1270001274.txt.gz · Last modified: 2010/03/30 19:07 by galt