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--- post-assembly_analysis:banana_slug_genome_browser [2010/03/31 02:07]
galt created
+++ post-assembly_analysis:banana_slug_genome_browser [2015/07/28 06:05] (current)
ceisenhart ↷ Page moved from banana_slug_genome_browser to post-assembly_analysis:banana_slug_genome_browser
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-  * [[http://bananadev.cse.ucsc.edu/|Banana Slug Genome Browser]] will have a UCSC genome browser, once we get to the point of having few enough contigs that building a browser makes sense.
+======Banana slug genome browser======
+Currently the banana slug genome is supported as a private track hub. For those who know how to set up custom track hubs, the link is here. **If it is your first time setting up a custom track hub, follow the instructions for 'Mounting the banana slug track hub' below!**
+http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt
+Currently the following assemblies are supported;
+ABySS
+SOAP
+Discovar //de novo//
+Mitochondrial
+===== Mounting the banana slug track hub =====
+To view the banana slug data please go to
+https://genome.ucsc.edu/cgi-bin/hgGateway
+and click the 'track hubs' button
+{{ ::firstbrowsershot.png |}}
+next navigate to the 'my hubs' tab
+{{ ::secondbrowsershot.png |}}
+Paste the url provided,
+http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt
+into the 'URL' text box and click the 'Add hub' button.  You will be redirected to the banana slug hub which can be used as normal.
+=====Creating a new track hub=====
+To setup a custom track hub follow the instructions here.
+**Note the banana slug track hub has already been created.** These are the instructions that were used to create it the first time, it can be accessed using the instructions above.
+https://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html

Banana Slug Genomics

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