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post-assembly_analysis:banana_slug_genome_browser [2015/05/15 12:23]
ceisenhart
post-assembly_analysis:banana_slug_genome_browser [2015/07/16 11:11]
ceisenhart
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-=====Banana slug genome browser===== +======Banana slug genome browser====== 
-Currently the banana slug genome is supported as a private track hub. +Currently the banana slug genome is supported as a private track hub. For those who know how to set up custom track hubs, the link is here. **If it is your first time setting up a custom track hub, follow the instructions for '​Mounting the banana slug track hub' below!**
  
 http://​hgwdev-ceisenhart.cse.ucsc.edu/​~ceisenhart/​hubs/​bananaSlug/​hub.txt http://​hgwdev-ceisenhart.cse.ucsc.edu/​~ceisenhart/​hubs/​bananaSlug/​hub.txt
  
-The data on the browser is in a VERY EARLY FORMAT. ​Currently ​only the 30 longest contig'​s for each group are supported ​on the browser. ​ The contigs are re-named before uploading, and can be viewed by using the '​sequences'​ button on the browser. Contact Chris Eisenhart to have your team's data put on the browser (ceisenhart@soe.ucsc.edu). Currently there is data on the banana slug hub for the following teams;+Currently the following assemblies ​are supported; 
 + 
 +ABySS
  
 SOAP SOAP
Line 10: Line 12:
 Discovar //de novo// ​ Discovar //de novo// ​
  
-==== Setup and viewing ​====+Mitochondrial  
 + 
 + 
 +===== Mounting the banana slug track hub =====
 To view the banana slug data please go to  To view the banana slug data please go to 
  
Line 27: Line 32:
 http://​hgwdev-ceisenhart.cse.ucsc.edu/​~ceisenhart/​hubs/​bananaSlug/​hub.txt http://​hgwdev-ceisenhart.cse.ucsc.edu/​~ceisenhart/​hubs/​bananaSlug/​hub.txt
  
-into the '​URL'​ text box and click the 'Add hub' button. ​ You will be redirected to the banana slug hub. +into the '​URL'​ text box and click the 'Add hub' button. ​ You will be redirected to the banana slug hub which can be used as normal 
 + 
 +=====Creating a new track hub===== 
 +To setup a custom track hub follow the instructions here.  
 + 
 +**Note the banana slug track hub has already been created.** These are the instructions that were used to create it the first time, it can be accessed using the instructions above.  
 + 
 +https://​genome.ucsc.edu/​goldenPath/​help/​hgTrackHubHelp.html 
 + 
post-assembly_analysis/banana_slug_genome_browser.txt · Last modified: 2015/07/27 23:05 by ceisenhart