post-assembly_analysis:banana_slug_genome_browser
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post-assembly_analysis:banana_slug_genome_browser [2015/05/15 19:17] ceisenhart Updated to 2015 |
post-assembly_analysis:banana_slug_genome_browser [2015/05/27 20:25] ceisenhart |
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| http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt | http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt | ||
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| + | The entire Ariolimax dolichophallus mitochondrial genome seems to be up on the browser in three contigs! Hopefully tracks will be made soon. | ||
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| + | The default contig names are often wrong, the correct names can be viewed by using the 'sequences' button on the browser. Contact Chris Eisenhart to have your team's data put on the browser (ceisenhart@soe.ucsc.edu). Currently the following assemblies are supported; | ||
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| + | ABySS | ||
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| + | SOAP | ||
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| + | Discovar //de novo// | ||
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| + | Mitochondrial | ||
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| + | ==== Setup and viewing ==== | ||
| + | To setup a track hub follow the instructions here, the banana slug track hub has already been created. To view it skip to the next section. | ||
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| + | https://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html | ||
| To view the banana slug data please go to | To view the banana slug data please go to | ||
post-assembly_analysis/banana_slug_genome_browser.txt · Last modified: 2015/07/28 06:05 by ceisenhart
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