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post-assembly_analysis:banana_slug_genome_browser [2015/05/15 19:23] ceisenhart |
post-assembly_analysis:banana_slug_genome_browser [2015/05/16 03:22] ceisenhart [Banana slug genome browser] |
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http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt | http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt | ||
- | The data on the browser is in a VERY EARLY FORMAT. Currently only the 30 longest contig's for each group are supported on the browser. The contigs are re-named before uploading, and can be viewed by using the 'sequences' button on the browser. Contact Chris Eisenhart to have your team's data put on the browser (ceisenhart@soe.ucsc.edu). Currently there is data on the banana slug hub for the following teams; | + | The entire Ariolimax dolichophallus mitochondrial genome seems to be up on the browser in three contigs! Hopefully tracks will be made soon. |
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+ | The data on the browser is in a VERY EARLY FORMAT. Currently only the 30 longest contig's for each group are supported on the browser. The contigs are re-named before uploading, and can be viewed by using the 'sequences' button on the browser. Contact Chris Eisenhart to have your team's data put on the browser (ceisenhart@soe.ucsc.edu). Currently the following assemblies are supported; | ||
SOAP | SOAP | ||
Discovar //de novo// | Discovar //de novo// | ||
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+ | Mitochondrial | ||
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==== Setup and viewing ==== | ==== Setup and viewing ==== |