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post-assembly_analysis:banana_slug_genome_browser [2015/05/15 19:17] ceisenhart Updated to 2015 |
post-assembly_analysis:banana_slug_genome_browser [2015/05/27 20:24] ceisenhart |
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http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt | http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt | ||
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+ | The entire Ariolimax dolichophallus mitochondrial genome seems to be up on the browser in three contigs! Hopefully tracks will be made soon. | ||
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+ | The data on the browser is in a VERY EARLY FORMAT. Currently only the 30 longest contig's for each group are supported on the browser. The contigs are re-named before uploading, and can be viewed by using the 'sequences' button on the browser. Contact Chris Eisenhart to have your team's data put on the browser (ceisenhart@soe.ucsc.edu). Currently the following assemblies are supported; | ||
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+ | ABySS | ||
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+ | SOAP | ||
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+ | Discovar //de novo// | ||
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+ | Mitochondrial | ||
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+ | ==== Setup and viewing ==== | ||
+ | To setup a track hub follow the instructions here, the banana slug track hub has already been created. To view it skip to the next section. | ||
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+ | https://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html | ||
To view the banana slug data please go to | To view the banana slug data please go to |