Sam Vohr presented the paper “Exact and complete short read alignment to microbial genomes using GPU programming”1) which describes SARUMAN a tools for aligning short reads to a reference using Needlemap-Wunsch alignment implemented using CUDA. Details can be found on the SARUMAN page.
It was decided that Wednesday June 8 at 12:00pm would be the deadline to get all updates into the wiki for grading.