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lecture_notes:05-27-2011 [2011/05/27 22:18] eyliaw |
lecture_notes:05-27-2011 [2011/05/28 03:25] karplus mapping 454_run3 not needed. |
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- | * Find out which lanes in 454 run 3 are banana slug runs. | + | * Find out which lanes in 454 run 3 are banana slug runs. But it turns out that this is not necessary: run "3" is not a separate run, but just run2 plus the non-banana-slug reads in other lanes. |
* Try mapping with Newbler or BWA. | * Try mapping with Newbler or BWA. | ||
* BLAST/BLAT it. | * BLAST/BLAT it. | ||
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* Illumina + 454 data as rank 1. | * Illumina + 454 data as rank 1. | ||
* # If insert length is negative, don't treat them as PE reads. | * # If insert length is negative, don't treat them as PE reads. | ||
- | * Newbler run. | + | * Newbler assemblies. |
* Take another look at Barcode of Life mapping: [[http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi#SG5|Invertebrate mitochondrial translation table]] | * Take another look at Barcode of Life mapping: [[http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi#SG5|Invertebrate mitochondrial translation table]] | ||
- | * | + | |
+ | * Ed presenting paper on Wednesday. Get paper over the weekend. |