Banana Slug Genomics

READING READS Lib1:

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Total inserted pairs = 1449494 

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READING READS Lib2:

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Total inserted pairs = 774725 

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LIBRARY Lib1 STATS:

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MAPPING READS TO CONTIGS:

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Number of single reads found on contigs = 1208432

Number of read-pairs used for pairing contigs / total pairs = 482735 / 495142

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READ PAIRS STATS:

Assembled pairs: 482735 (965470 sequences)

	Satisfied in distance/logic within contigs (i.e. -> <-, distance on target: 3500 +/-1750): 15831

	Unsatisfied in distance within contigs (i.e. distance out-of-bounds): 279966

	Unsatisfied pairing logic within contigs (i.e. illogical pairing ->->, <-<- or <-->): 34234

1. –

	Satisfied in distance/logic within a given contig pair (pre-scaffold): 139853

	Unsatisfied in distance within a given contig pair (i.e. calculated distances out-of-bounds): 12851

1. –

Total satisfied: 155684	unsatisfied: 327051

Estimated insert size statistics (based on 15831 pairs): 

	Mean insert size = 2101

	Median insert size = 2039

REPEATS:

Number of repeated edges = 8

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LIBRARY Lib2 STATS:

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MAPPING READS TO CONTIGS:

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Number of single reads found on contigs = 759686

Number of read-pairs used for pairing contigs / total pairs = 291352 / 322318

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READ PAIRS STATS:

Assembled pairs: 291352 (582704 sequences)

	Satisfied in distance/logic within contigs (i.e. -> <-, distance on target: 6500 +/-3250): 847

	Unsatisfied in distance within contigs (i.e. distance out-of-bounds): 170638

	Unsatisfied pairing logic within contigs (i.e. illogical pairing ->->, <-<- or <-->): 17248

1. –

	Satisfied in distance/logic within a given contig pair (pre-scaffold): 100273

	Unsatisfied in distance within a given contig pair (i.e. calculated distances out-of-bounds): 2346

1. –

Total satisfied: 101120	unsatisfied: 190232

Estimated insert size statistics (based on 847 pairs): 

	Mean insert size = 3668

	Median insert size = 3458

REPEATS:

Number of repeated edges = 3

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SUMMARY:

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Inserted contig file;

	Total number of contigs = 1126557

	Sum (bp) = 1839371352

		Total number of N's = 51400

		Sum (bp) no N's = 1839319952

	GC Content = 41.11%

	Max contig size = 55757

	Min contig size = 29

	Average contig size = 1632

	N25 = 5989

	N50 = 3531

	N75 = 1944

After scaffolding Lib1:

	Total number of scaffolds = 1126514

	Sum (bp) = 1839488965

		Total number of N's = 169013

		Sum (bp) no N's = 1839319952

	GC Content = 41.11%

	Max scaffold size = 55757

	Min scaffold size = 29

	Average scaffold size = 1632

	N25 = 5990

	N50 = 3532

	N75 = 1944

After scaffolding Lib2:

	Total number of scaffolds = 1126500

	Sum (bp) = 1839547327

		Total number of N's = 227375

		Sum (bp) no N's = 1839319952

	GC Content = 41.11%

	Max scaffold size = 55757

	Min scaffold size = 29

	Average scaffold size = 1632

	N25 = 5990

	N50 = 3532

	N75 = 1944

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