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contributors:team_5:sspacesummaryfile

READING READS Lib1:


Total inserted pairs = 1449494 

READING READS Lib2:


Total inserted pairs = 774725 

LIBRARY Lib1 STATS:

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MAPPING READS TO CONTIGS:


Number of single reads found on contigs = 1208432
Number of read-pairs used for pairing contigs / total pairs = 482735 / 495142

READ PAIRS STATS:

Assembled pairs: 482735 (965470 sequences)
	Satisfied in distance/logic within contigs (i.e. -> <-, distance on target: 3500 +/-1750): 15831
	Unsatisfied in distance within contigs (i.e. distance out-of-bounds): 279966
	Unsatisfied pairing logic within contigs (i.e. illogical pairing ->->, <-<- or <-->): 34234
	Satisfied in distance/logic within a given contig pair (pre-scaffold): 139853
	Unsatisfied in distance within a given contig pair (i.e. calculated distances out-of-bounds): 12851
Total satisfied: 155684	unsatisfied: 327051
Estimated insert size statistics (based on 15831 pairs): 
	Mean insert size = 2101
	Median insert size = 2039

REPEATS:

Number of repeated edges = 8

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LIBRARY Lib2 STATS:

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MAPPING READS TO CONTIGS:


Number of single reads found on contigs = 759686
Number of read-pairs used for pairing contigs / total pairs = 291352 / 322318

READ PAIRS STATS:

Assembled pairs: 291352 (582704 sequences)
	Satisfied in distance/logic within contigs (i.e. -> <-, distance on target: 6500 +/-3250): 847
	Unsatisfied in distance within contigs (i.e. distance out-of-bounds): 170638
	Unsatisfied pairing logic within contigs (i.e. illogical pairing ->->, <-<- or <-->): 17248
	Satisfied in distance/logic within a given contig pair (pre-scaffold): 100273
	Unsatisfied in distance within a given contig pair (i.e. calculated distances out-of-bounds): 2346
Total satisfied: 101120	unsatisfied: 190232
Estimated insert size statistics (based on 847 pairs): 
	Mean insert size = 3668
	Median insert size = 3458

REPEATS:

Number of repeated edges = 3

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SUMMARY:


Inserted contig file;
	Total number of contigs = 1126557
	Sum (bp) = 1839371352
		Total number of N's = 51400
		Sum (bp) no N's = 1839319952
	GC Content = 41.11%
	Max contig size = 55757
	Min contig size = 29
	Average contig size = 1632
	N25 = 5989
	N50 = 3531
	N75 = 1944
After scaffolding Lib1:
	Total number of scaffolds = 1126514
	Sum (bp) = 1839488965
		Total number of N's = 169013
		Sum (bp) no N's = 1839319952
	GC Content = 41.11%
	Max scaffold size = 55757
	Min scaffold size = 29
	Average scaffold size = 1632
	N25 = 5990
	N50 = 3532
	N75 = 1944
After scaffolding Lib2:
	Total number of scaffolds = 1126500
	Sum (bp) = 1839547327
		Total number of N's = 227375
		Sum (bp) no N's = 1839319952
	GC Content = 41.11%
	Max scaffold size = 55757
	Min scaffold size = 29
	Average scaffold size = 1632
	N25 = 5990
	N50 = 3532
	N75 = 1944

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contributors/team_5/sspacesummaryfile.txt · Last modified: 2015/09/02 09:21 by ceisenhart