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contributors:team_5:50_ucsf_blast

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A PCRE internal error occured. This might be caused by a faulty plugin

======50% UCSF Libraries BLAST results, 1-15 top length scafolds====== ====Scafold length 34857==== RID: NJSGMYXE01R |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| |PREDICTED: Cicer arietinum tryptophan synthase beta chain 2, chloroplastic-like (LOC101505552), mRNA|54.7|54.7|0%|0.11|100%|XM_004499989.1| |Strongyloides papillosus genome assembly S_papillosus_LIN, scaffold SPAL_contig0000001|52.8|52.8|0%|0.40|100%|LM525560.1| ====Scafold length 33799==== RID: NJSGMYXE01R |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| |Branchiostoma floridae hypothetical protein, mRNA|150|150|0%|1e-30|88%|XM_002589018.1| |PREDICTED: Vollenhovia emeryi serine/threonine-protein kinase 3 (LOC105564272), transcript variant X2, mRNA|128|128|0%|6e-24|81%|XM_012016531.1| |Salmo salar Serine/threonine-protein kinase 4 (stk4), mRNA|122|122|0%|3e-22|80%|NM_001173614.1| |PREDICTED: Saccoglossus kowalevskii serine/threonine-protein kinase 3-like (LOC100377733), mRNA|108|108|0%|8e-18|86%|XM_002736660.2| |PREDICTED: Oryctolagus cuniculus serine/threonine kinase 4 (STK4), mRNA|104|104|0%|1e-16|93%|XM_002721229.2| |Drosophila erecta GG20903 (Dere\GG20903), mRNA|95.3|95.3|0%|6e-14|84%|XM_001974787.1| |PREDICTED: Spermophilus tridecemlineatus serine/threonine kinase 4 (Stk4), transcript variant X2, mRNA|89.8|89.8|0%|3e-12|78%|XM_005325287.1| |PREDICTED: Spermophilus tridecemlineatus serine/threonine kinase 4 (Stk4), transcript variant X1, mRNA|89.8|89.8|0%|3e-12|78%|XM_005325287.1| |PREDICTED: Equus przewalskii serine/threonine kinase 4 (STK4), transcript variant X2, mRNA| 87.9 |87.9 |0%| 1e-11 |90%| XM_008529631.1| |PREDICTED: Equus przewalskii serine/threonine kinase 4 (STK4), transcript variant X1, mRNA| 87.9 |87.9 |0%| 1e-11| 90%| XM_008529630.1| ======50% UCSF Libraries BLAST results, 15-30 top length scafolds====== =====Database: Nucleotide collection (nt)===== =====Sequences producing significant alignments, using scafold as query===== ====15th scafold, length 29805==== RID: NDAHDY9901R |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| |PREDICTED: Aplysia californica UPF0047 protein C4A8.02c-like (LOC101857119), transcript variant X2, mRNA|111|111|0%|6e-19|83%|XM_005099372.1| |PREDICTED: Aplysia californica UPF0047 protein C4A8.02c-like (LOC101857119), transcript variant X1, mRNA|111|111|0%|6e-19|83%|XM_005099371.1| |Helix pomatia Cd-specific metallothionein gene, complete cds|99|183|0%|4e-15|81%|FJ755002.1| |Trichobilharzia regenti genome assembly T_regenti_v1_0_4, scaffold TRE_scaffold0004144|56.5|56.5|0%|0.027|100%|LL004144.1| ====16th scafold, length 29232==== RID: NDDMNPMR015 |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| |PREDICTED: Aplysia californica uncharacterized LOC101861265 (LOC101861265), mRNA|211|211|0%|5e-49|85%|XM_005113378.1| |PREDICTED: Aplysia californica uncharacterized LOC101858071 (LOC101858071), mRNA|211|211|0%|5e-49|85%|XM_005110396.1| |PREDICTED: Aplysia californica uncharacterized LOC101857601 (LOC101857601), mRNA|211|211|0%|5e-49|85%|XM_005108520.1| |Austropeplea tomentosa voucher AM:04_27_07 28S ribosomal RNA gene, partial sequence|211|211|0%|5e-49|85%|HQ156217.1| |Prietocolella barbarae voucher AM:05_27_07 28S ribosomal RNA gene, partial sequence|211|211|0%|5e-49|85%|HQ156216.1| |Latia neritoides voucher MNB 104.551 28S ribosomal RNA gene, partial sequence|211|211|0%|5e-49|85%|FJ917245.1| |Smeagol phillipensis voucher EED-Phy-878 28S ribosomal RNA gene, partial sequence|211|211|0%|5e-49|85%|FJ917229.1| ====17th scafold, length 29174==== RID: NF02SUXK01R |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| |Abax parallelepipedus microsatellite DNA, clone Apa14224|97.1|97.1|0%|2e-14|88%|AJ510195.1| ====18th scafold, length 29126==== RID: NFBJG2PP01R |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| |Biomphalaria glabrata BAC clone BG_BBa-137L24 from chromosome unknown, complete sequence|56.5|56.5|0%|0.026|97%|AC233165.2| ====19th scafold, length 22322==== RID: NFBJG2PP01R |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| |Micromenetus dilatatus 28S large subunit ribosomal RNA gene, partial sequence|60.2|60.2|0%|0.002|79%|DQ256735.1| |Arion vulgaris clone ALU_06_4 microsatellite sequence|54.7|54.7|0%|0.091|100%|KP247478.1| |Glyptophysa gibbosa 28S large subunit ribosomal RNA gene, partial sequence|54.7|54.7|0%|0.091|100%|DQ256736.1| |Elaeophora elaphi genome assembly E_elaphi, scaffold EEL_scaffold0000026|52.8|52.8|0%|0.33|100%|LL710301.1| ====20th scafold, length 28130==== RID: NFP99B6K015 No significant similarity found. ====21th scafold, length 27845==== RID: NFUV0CRE014 No significant similarity found.

Discussion

, 2015/05/16 04:00

O% Query cover does not look like much of a hit to me. Are these really the best hits BLAST is finding in the nr nucleotide database?

(Sequence identity of 85% looks good, but with total scores of 211, it must be over a rather short stretch.)

All of the hits showed 0% query cover. No hit showed a value greater than this. Plus, those are values similar to values observed by the SOAPdenovo assembler.

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contributors/team_5/50_ucsf_blast.1431923779.txt.gz · Last modified: 2015/05/18 04:36 by gepoliano