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==== Run 3 contig/scaffold statistics ==== === Information for assembly Scaffold 'soapdenovo2_allAssembly_1.scafSeq'.(cut_off_length < 100bp) === | Size_includeN | 2587459468 | | Size_withoutN | 2140710711 | | Scaffold_Num | 2427310 | | Mean_Size | 1065 | | Median_Size | 120 | | Longest_Seq | 124995 | | Shortest_Seq | 100 | | Singleton_Num | 2132889 | | Average_length_of_break(N)_in_scaffold | 184 | | Known_genome_size | NaN | | Total_scaffold_length_as_percentage_of_known_genome_size | NaN | | scaffolds>100 | 2352627 | 96.92% | | scaffolds>500 | 306325 | 12.62% | | scaffolds>1K | 258295 | 10.64% | | scaffolds>10K | 79772 | 3.29% | | scaffolds>100K | 11 | 0.00% | | scaffolds>1M | 0 | 0.00% | | Nucleotide_A | 636474829 | 24.60% | | Nucleotide_C | 449421189 | 17.37% | | Nucleotide_G | 437992811 | 16.93% | | Nucleotide_T | 616821882 | 23.84% | | GapContent_N | 446748757 | 17.27% | | Non_ACGTN | 0 | 0.00% | | GC_Content | 41.45% | (G+C)/(A+C+G+T) | | N10 | 34414 | 5824 | | N20 | 25402 | 14703 | | N30 | 19978 | 26262 | | N40 | 15927 | 40789 | | N50 | 12629 | 59060 | | N60 | 9721 | 82395 | | N70 | 7008 | 113625 | | N80 | 4173 | 160690 | | N90 | 527 | 301858 | | NG50 | NaN | NaN | | N50_scaffold-NG50_scaffold_length_difference | NaN | === Information for assembly Contig 'soapdenovo2_allAssembly_1.contig'.(cut_off_length < 100bp) === | Size_includeN | 2164389044 | | Size_withoutN | 2164389044 | | Contig_Num | 4875101 | | Mean_Size | 443 | | Median_Size | 134 | | Longest_Seq | 31860 | | Shortest_Seq | 100 | | Contig>100 | 4799456 | 98.45% | | Contig>500 | 981023 | 19.24% | | Contig>1K | 572222 | 11.74% | | Contig>10K | 1404 | 0.03% | | Contig>100K | 0 | 0.00% | | Contig>1M | 0 | 0.00% | | Nucleotide_A | 653268964 | 30.18% | | Nucleotide_C | 458700984 | 21.19% | | Nucleotide_G | 437165011 | 20.20% | | Nucleotide_T | 615254085 | 28.43% | | GapContent_N | 0 | 0.00% | | Non_ACGTN | 0 | 0.00% | | GC_Content | 41.39% | (G+C)/(A+C+G+T) | | N10 | 4657 | 34595 | | N20 | 3276 | 90833 | | N30 | 2460 | 167461 | | N40 | 1868 | 268688 | | N50 | 1388 | 403185 | | N60 | 969 | 589355 | | N70 | 562 | 878439 | | N80 | 209 | 1526654 | | N90 | 126 | 2973016 | | NG50 | NaN | NaN | | N50_contig-NG50_contig_length_difference | NaN | | Number_of_contigs_in_scaffolds | 2742212 | | Number_of_contigs_not_in_scaffolds(Singleton) | 2132889 | | Average_number_of_contigs_per_scaffold | 9.3 |
