contributors:team_2:run3
Run 3 contig/scaffold statistics
| Size_includeN | 2587459468 |
| Size_withoutN | 2140710711 |
| Scaffold_Num | 2427310 |
| Mean_Size | 1065 |
| Median_Size | 120 |
| Longest_Seq | 124995 |
| Shortest_Seq | 100 |
| Singleton_Num | 2132889 |
| Average_length_of_break(N)_in_scaffold | 184 |
| Known_genome_size | NaN |
| Total_scaffold_length_as_percentage_of_known_genome_size | NaN |
| scaffolds>100 | 2352627 | 96.92% |
| scaffolds>500 | 306325 | 12.62% |
| scaffolds>1K | 258295 | 10.64% |
| scaffolds>10K | 79772 | 3.29% |
| scaffolds>100K | 11 | 0.00% |
| scaffolds>1M | 0 | 0.00% |
| Nucleotide_A | 636474829 | 24.60% |
| Nucleotide_C | 449421189 | 17.37% |
| Nucleotide_G | 437992811 | 16.93% |
| Nucleotide_T | 616821882 | 23.84% |
| GapContent_N | 446748757 | 17.27% |
| Non_ACGTN | 0 | 0.00% |
| GC_Content | 41.45% | (G+C)/(A+C+G+T) |
| N10 | 34414 | 5824 |
| N20 | 25402 | 14703 |
| N30 | 19978 | 26262 |
| N40 | 15927 | 40789 |
| N50 | 12629 | 59060 |
| N60 | 9721 | 82395 |
| N70 | 7008 | 113625 |
| N80 | 4173 | 160690 |
| N90 | 527 | 301858 |
| NG50 | NaN | NaN |
| N50_scaffold-NG50_scaffold_length_difference | NaN | |
| Size_includeN | 2164389044 |
| Size_withoutN | 2164389044 |
| Contig_Num | 4875101 |
| Mean_Size | 443 |
| Median_Size | 134 |
| Longest_Seq | 31860 |
| Shortest_Seq | 100 |
| Contig>100 | 4799456 | 98.45% |
| Contig>500 | 981023 | 19.24% |
| Contig>1K | 572222 | 11.74% |
| Contig>10K | 1404 | 0.03% |
| Contig>100K | 0 | 0.00% |
| Contig>1M | 0 | 0.00% |
| Nucleotide_A | 653268964 | 30.18% |
| Nucleotide_C | 458700984 | 21.19% |
| Nucleotide_G | 437165011 | 20.20% |
| Nucleotide_T | 615254085 | 28.43% |
| GapContent_N | 0 | 0.00% |
| Non_ACGTN | 0 | 0.00% |
| GC_Content | 41.39% | (G+C)/(A+C+G+T) |
| N10 | 4657 | 34595 |
| N20 | 3276 | 90833 |
| N30 | 2460 | 167461 |
| N40 | 1868 | 268688 |
| N50 | 1388 | 403185 |
| N60 | 969 | 589355 |
| N70 | 562 | 878439 |
| N80 | 209 | 1526654 |
| N90 | 126 | 2973016 |
| NG50 | NaN | NaN |
| N50_contig-NG50_contig_length_difference | NaN | |
| Number_of_contigs_in_scaffolds | 2742212 |
| Number_of_contigs_not_in_scaffolds(Singleton) | 2132889 |
| Average_number_of_contigs_per_scaffold | 9.3 |
contributors/team_2/run3.txt · Last modified: 2015/09/02 16:19 by ceisenhart
