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contributors:team_2:run3

Run 3 contig/scaffold statistics

Information for assembly Scaffold 'soapdenovo2_allAssembly_1.scafSeq'.(cut_off_length < 100bp)

Size_includeN 2587459468
Size_withoutN 2140710711
Scaffold_Num 2427310
Mean_Size 1065
Median_Size 120
Longest_Seq 124995
Shortest_Seq 100
Singleton_Num 2132889
Average_length_of_break(N)_in_scaffold 184
Known_genome_size NaN
Total_scaffold_length_as_percentage_of_known_genome_size NaN
scaffolds>100 2352627 96.92%
scaffolds>500 306325 12.62%
scaffolds>1K 258295 10.64%
scaffolds>10K 79772 3.29%
scaffolds>100K 11 0.00%
scaffolds>1M 0 0.00%
Nucleotide_A 636474829 24.60%
Nucleotide_C 449421189 17.37%
Nucleotide_G 437992811 16.93%
Nucleotide_T 616821882 23.84%
GapContent_N 446748757 17.27%
Non_ACGTN 0 0.00%
GC_Content 41.45% (G+C)/(A+C+G+T)
N10 34414 5824
N20 25402 14703
N30 19978 26262
N40 15927 40789
N50 12629 59060
N60 9721 82395
N70 7008 113625
N80 4173 160690
N90 527 301858
NG50 NaN NaN
N50_scaffold-NG50_scaffold_length_difference NaN

Information for assembly Contig 'soapdenovo2_allAssembly_1.contig'.(cut_off_length < 100bp)

Size_includeN 2164389044
Size_withoutN 2164389044
Contig_Num 4875101
Mean_Size 443
Median_Size 134
Longest_Seq 31860
Shortest_Seq 100
Contig>100 4799456 98.45%
Contig>500 981023 19.24%
Contig>1K 572222 11.74%
Contig>10K 1404 0.03%
Contig>100K 0 0.00%
Contig>1M 0 0.00%
Nucleotide_A 653268964 30.18%
Nucleotide_C 458700984 21.19%
Nucleotide_G 437165011 20.20%
Nucleotide_T 615254085 28.43%
GapContent_N 0 0.00%
Non_ACGTN 0 0.00%
GC_Content 41.39% (G+C)/(A+C+G+T)
N10 4657 34595
N20 3276 90833
N30 2460 167461
N40 1868 268688
N50 1388 403185
N60 969 589355
N70 562 878439
N80 209 1526654
N90 126 2973016
NG50 NaN NaN
N50_contig-NG50_contig_length_difference NaN
Number_of_contigs_in_scaffolds 2742212
Number_of_contigs_not_in_scaffolds(Singleton) 2132889
Average_number_of_contigs_per_scaffold 9.3
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contributors/team_2/run3.txt · Last modified: 2015/09/02 09:19 by ceisenhart