contributors:team_2:run2
Differences
This shows you the differences between two versions of the page.
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contributors:team_2:run2 [2015/05/17 04:02] charles created |
contributors:team_2:run2 [2015/09/02 16:19] (current) ceisenhart ↷ Page moved from soapdenovo2:run2 to contributors:team_2:run2 |
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| Line 6: | Line 6: | ||
| | Size_withoutN | 1966097910 | | | Size_withoutN | 1966097910 | | ||
| | Scaffold_Num | 1702922 | | | Scaffold_Num | 1702922 | | ||
| - | | Mean_Size | 1016 | | + | | Mean_Size | 1400 | |
| - | | Median_Size | 131 | | + | | Median_Size | 127 | |
| - | | Longest_Seq | 60333 | | + | | Longest_Seq | 103808 | |
| | Shortest_Seq | 100 | | | Shortest_Seq | 100 | | ||
| - | | Singleton_Num | 1617596 | | + | | Singleton_Num | 1348542 | |
| - | | Average_length_of_break(N)_in_scaffold | 44 | | + | | Average_length_of_break(N)_in_scaffold | 246 | |
| | Known_genome_size | NaN | | | Known_genome_size | NaN | | ||
| | Total_scaffold_length_as_percentage_of_known_genome_size | NaN | | | Total_scaffold_length_as_percentage_of_known_genome_size | NaN | | ||
| - | | scaffolds>100 | 1996626 | 98.34% | | + | | scaffolds>100 | 1669049 | 98.01% | |
| - | | scaffolds>500 | 493758 | 24.32% | | + | | scaffolds>500 | 381651 | 22.41% | |
| - | | scaffolds>1K | 381668 | 18.80% | | + | | scaffolds>1K | 316768 | 18.60% | |
| - | | scaffolds>10K | 35884 | 1.77% | | + | | scaffolds>10K | 67694 | 3.98% | |
| - | | scaffolds>100K | 0 | 0.00% | | + | | scaffolds>100K | 2 | 0.00% | |
| | scaffolds>1M | 0 | 0.00% | | | scaffolds>1M | 0 | 0.00% | | ||
| - | | Nucleotide_A | 587193873 | 28.44% | | + | | Nucleotide_A | 584441943 | 24.50% | |
| - | | Nucleotide_C | 410937132 | 19.90% | | + | | Nucleotide_C | 408838898 | 17.14% | |
| - | | Nucleotide_G | 402424364 | 19.49% | | + | | Nucleotide_G | 401018398 | 16.81% | |
| - | | Nucleotide_T | 573838109 | 27.79% | | + | | Nucleotide_T | 571798671 | 23.97% | |
| - | | GapContent_N | 90271721 | 4.37% | | + | | GapContent_N | 419659641 | 17.59% | |
| | Non_ACGTN | 0 | 0.00% | | | Non_ACGTN | 0 | 0.00% | | ||
| - | | GC_Content | 41.20% | (G+C)/(A+C+G+T) | | + | | GC_Content | 41.19% | (G+C)/(A+C+G+T) | |
| - | | N10 | 15739 | 10008 | | + | | N10 | 25369 | 7250 | |
| - | | N20 | 11476 | 25568 | | + | | N20 | 18795 | 18322 | |
| - | | N30 | 8922 | 46077 | | + | | N30 | 14807 | 32691 | |
| - | | N40 | 7049 | 72179 | | + | | N40 | 11893 | 50718 | |
| - | | N50 | 5554 | 105217 | | + | | N50 | 9501 | 73185 | |
| - | | N60 | 4235 | 147751 | | + | | N60 | 7401 | 101632 | |
| - | | N70 | 3007 | 205382 | | + | | N70 | 5469 | 139040 | |
| - | | N80 | 1765 | 293730 | | + | | N80 | 3520 | 192876 | |
| - | | N90 | 428 | 509432 | | + | | N90 | 1215 | 299499 | |
| | NG50 | NaN | NaN | | | NG50 | NaN | NaN | | ||
| Line 45: | Line 45: | ||
| === Information for assembly Contig 'soapdenovo2_sparseGraph.contig'.(cut_off_length < 100bp) === | === Information for assembly Contig 'soapdenovo2_sparseGraph.contig'.(cut_off_length < 100bp) === | ||
| - | | Size_includeN | 2051251797 | | + | | Size_includeN | 2051284322 | |
| - | | Size_withoutN | 2051251797 | | + | | Size_withoutN | 2051284322 | |
| - | | Contig_Num | 3854379 | | + | | Contig_Num | 3854447 | |
| | Mean_Size | 532 | | | Mean_Size | 532 | | ||
| | Median_Size | 171 | | | Median_Size | 171 | | ||
| Line 53: | Line 53: | ||
| | Shortest_Seq | 100 | | | Shortest_Seq | 100 | | ||
| - | | Contig>100 | 3819222 | 99.09% | | + | | Contig>100 | 3819161 | 99.08% | |
| - | | Contig>500 | 980997 | 25.45% | | + | | Contig>500 | 981023 | 25.45% | |
| - | | Contig>1K | 583671 | 15.14% | | + | | Contig>1K | 583666 | 15.14% | |
| | Contig>10K | 891 | 0.02% | | | Contig>10K | 891 | 0.02% | | ||
| | Contig>100K | 0 | 0.00% | | | Contig>100K | 0 | 0.00% | | ||
| | Contig>1M | 0 | 0.00% | | | Contig>1M | 0 | 0.00% | | ||
| - | | Nucleotide_A | 616192468 | 30.04% | | + | | Nucleotide_A | 616184147 | 30.04% | |
| - | | Nucleotide_C | 432122415 | 21.07% | | + | | Nucleotide_C | 432139689 | 21.07% | |
| - | | Nucleotide_G | 415271256 | 20.24% | | + | | Nucleotide_G | 415266192 | 20.24% | |
| - | | Nucleotide_T | 587665658 | 28.65% | | + | | Nucleotide_T | 587694294 | 28.65% | |
| | GapContent_N | 0 | 0.00% | | | GapContent_N | 0 | 0.00% | | ||
| | Non_ACGTN | 0 | 0.00% | | | Non_ACGTN | 0 | 0.00% | | ||
| | GC_Content | 41.31% | (G+C)/(A+C+G+T) | | | GC_Content | 41.31% | (G+C)/(A+C+G+T) | | ||
| - | | N10 | 4396 | 35101 | | + | | N10 | 4397 | 35096 | |
| - | | N20 | 3142 | 91078 | | + | | N20 | 3142 | 91070 | |
| - | | N30 | 2400 | 166140 | | + | | N30 | 2400 | 166135 | |
| - | | N40 | 1860 | 263478 | | + | | N40 | 1860 | 263464 | |
| - | | N50 | 1425 | 389550 | | + | | N50 | 1425 | 389531 | |
| - | | N60 | 1048 | 557252 | | + | | N60 | 1048 | 557236 | |
| - | | N70 | 694 | 796148 | | + | | N70 | 694 | 796146 | |
| - | | N80 | 335 | 1214089 | | + | | N80 | 335 | 1214116 | |
| - | | N90 | 149 | 2184169 | | + | | N90 | 149 | 2184200 | |
| | NG50 | NaN | NaN | | | NG50 | NaN | NaN | | ||
| | N50_contig-NG50_contig_length_difference | NaN | | | N50_contig-NG50_contig_length_difference | NaN | | ||
| - | | Number_of_contigs_in_scaffolds | 2236783 | | + | | Number_of_contigs_in_scaffolds | 2505905 | |
| - | | Number_of_contigs_not_in_scaffolds(Singleton) | 1617596 | | + | | Number_of_contigs_not_in_scaffolds(Singleton) | 1348542 | |
| - | | Average_number_of_contigs_per_scaffold | 5.4 | | + | | Average_number_of_contigs_per_scaffold | 7.1 | |
contributors/team_2/run2.1431835372.txt.gz · Last modified: 2015/05/17 04:02 by charles
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