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==== Run 1 contig/scaffold statistics ==== <-- Information for assembly Scaffold 'soapdenovo2_sparseGraph.scafSeq'.(cut_off_length < 100bp) --> | Size_includeN | 2064665199 | | Size_withoutN | 1974393478 | | Scaffold_Num | 2030303 | | Mean_Size | 1016 | | Median_Size | 131 | | Longest_Seq | 60333 | | Shortest_Seq | 100 | | Singleton_Num | 1617596 | | Average_length_of_break(N)_in_scaffold | 44 | | Known_genome_size | NaN | | Total_scaffold_length_as_percentage_of_known_genome_size | NaN | | scaffolds>100 | 1996626 | 98.34% | | scaffolds>500 | 493758 | 24.32% | | scaffolds>1K | 381668 | 18.80% | | scaffolds>10K | 35884 | 1.77% | | scaffolds>100K | 0 | 0.00% | | scaffolds>1M | 0 | 0.00% | | Nucleotide_A | 587193873 | 28.44% | | Nucleotide_C | 410937132 | 19.90% | | Nucleotide_G | 402424364 | 19.49% | | Nucleotide_T | 573838109 | 27.79% | | GapContent_N | 90271721 | 4.37% | | Non_ACGTN | 0 | 0.00% | | GC_Content | 41.20% | (G+C)/(A+C+G+T) | | N10 | 15739 | 10008 | | N20 | 11476 | 25568 | | N30 | 8922 | 46077 | | N40 | 7049 | 72179 | | N50 | 5554 | 105217 | | N60 | 4235 | 147751 | | N70 | 3007 | 205382 | | N80 | 1765 | 293730 | | N90 | 428 | 509432 | | NG50 | NaN | NaN | | N50_scaffold-NG50_scaffold_length_difference | NaN | <-- Information for assembly Contig 'soapdenovo2_sparseGraph.contig'.(cut_off_length < 100bp) --> | Size_includeN | 2051251797 | | Size_withoutN | 2051251797 | | Contig_Num | 3854379 | | Mean_Size | 532 | | Median_Size | 171 | | Longest_Seq | 22512 | | Shortest_Seq | 100 | | Contig>100 | 3819222 | 99.09% | | Contig>500 | 980997 | 25.45% | | Contig>1K | 583671 | 15.14% | | Contig>10K | 891 | 0.02% | | Contig>100K | 0 | 0.00% | | Contig>1M | 0 | 0.00% | | Nucleotide_A | 616192468 | 30.04% | | Nucleotide_C | 432122415 | 21.07% | | Nucleotide_G | 415271256 | 20.24% | | Nucleotide_T | 587665658 | 28.65% | | GapContent_N | 0 | 0.00% | | Non_ACGTN | 0 | 0.00% | | GC_Content | 41.31% | (G+C)/(A+C+G+T) | | N10 | 4396 | 35101 | | N20 | 3142 | 91078 | | N30 | 2400 | 166140 | | N40 | 1860 | 263478 | | N50 | 1425 | 389550 | | N60 | 1048 | 557252 | | N70 | 694 | 796148 | | N80 | 335 | 1214089 | | N90 | 149 | 2184169 | | NG50 | NaN | NaN | | N50_contig-NG50_contig_length_difference | NaN | | Number_of_contigs_in_scaffolds | 2236783 | | Number_of_contigs_not_in_scaffolds(Singleton) | 1617596 | | Average_number_of_contigs_per_scaffold | 5.4 |
