contributors:team_2:run1
Run 1 contig/scaffold statistics
| Size_includeN | 2064665199 |
| Size_withoutN | 1974393478 |
| Scaffold_Num | 2030303 |
| Mean_Size | 1016 |
| Median_Size | 131 |
| Longest_Seq | 60333 |
| Shortest_Seq | 100 |
| Singleton_Num | 1617596 |
| Average_length_of_break(N)_in_scaffold | 44 |
| Known_genome_size | NaN |
| Total_scaffold_length_as_percentage_of_known_genome_size | NaN |
| scaffolds>100 | 1996626 | 98.34% |
| scaffolds>500 | 493758 | 24.32% |
| scaffolds>1K | 381668 | 18.80% |
| scaffolds>10K | 35884 | 1.77% |
| scaffolds>100K | 0 | 0.00% |
| scaffolds>1M | 0 | 0.00% |
| Nucleotide_A | 587193873 | 28.44% |
| Nucleotide_C | 410937132 | 19.90% |
| Nucleotide_G | 402424364 | 19.49% |
| Nucleotide_T | 573838109 | 27.79% |
| GapContent_N | 90271721 | 4.37% |
| Non_ACGTN | 0 | 0.00% |
| GC_Content | 41.20% | (G+C)/(A+C+G+T) |
| N10 | 15739 | 10008 |
| N20 | 11476 | 25568 |
| N30 | 8922 | 46077 |
| N40 | 7049 | 72179 |
| N50 | 5554 | 105217 |
| N60 | 4235 | 147751 |
| N70 | 3007 | 205382 |
| N80 | 1765 | 293730 |
| N90 | 428 | 509432 |
| NG50 | NaN | NaN |
| N50_scaffold-NG50_scaffold_length_difference | NaN | |
| Size_includeN | 2051251797 |
| Size_withoutN | 2051251797 |
| Contig_Num | 3854379 |
| Mean_Size | 532 |
| Median_Size | 171 |
| Longest_Seq | 22512 |
| Shortest_Seq | 100 |
| Contig>100 | 3819222 | 99.09% |
| Contig>500 | 980997 | 25.45% |
| Contig>1K | 583671 | 15.14% |
| Contig>10K | 891 | 0.02% |
| Contig>100K | 0 | 0.00% |
| Contig>1M | 0 | 0.00% |
| Nucleotide_A | 616192468 | 30.04% |
| Nucleotide_C | 432122415 | 21.07% |
| Nucleotide_G | 415271256 | 20.24% |
| Nucleotide_T | 587665658 | 28.65% |
| GapContent_N | 0 | 0.00% |
| Non_ACGTN | 0 | 0.00% |
| GC_Content | 41.31% | (G+C)/(A+C+G+T) |
| N10 | 4396 | 35101 |
| N20 | 3142 | 91078 |
| N30 | 2400 | 166140 |
| N40 | 1860 | 263478 |
| N50 | 1425 | 389550 |
| N60 | 1048 | 557252 |
| N70 | 694 | 796148 |
| N80 | 335 | 1214089 |
| N90 | 149 | 2184169 |
| NG50 | NaN | NaN |
| N50_contig-NG50_contig_length_difference | NaN | |
| Number_of_contigs_in_scaffolds | 2236783 |
| Number_of_contigs_not_in_scaffolds(Singleton) | 1617596 |
| Average_number_of_contigs_per_scaffold | 5.4 |
contributors/team_2/run1.txt · Last modified: 2015/09/02 16:18 by ceisenhart
