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contributors:team_2:run1

Run 1 contig/scaffold statistics

Information for assembly Scaffold 'soapdenovo2_sparseGraph.scafSeq'.(cut_off_length < 100bp)

Size_includeN 2064665199
Size_withoutN 1974393478
Scaffold_Num 2030303
Mean_Size 1016
Median_Size 131
Longest_Seq 60333
Shortest_Seq 100
Singleton_Num 1617596
Average_length_of_break(N)_in_scaffold 44
Known_genome_size NaN
Total_scaffold_length_as_percentage_of_known_genome_size NaN
scaffolds>100 1996626 98.34%
scaffolds>500 493758 24.32%
scaffolds>1K 381668 18.80%
scaffolds>10K 35884 1.77%
scaffolds>100K 0 0.00%
scaffolds>1M 0 0.00%
Nucleotide_A 587193873 28.44%
Nucleotide_C 410937132 19.90%
Nucleotide_G 402424364 19.49%
Nucleotide_T 573838109 27.79%
GapContent_N 90271721 4.37%
Non_ACGTN 0 0.00%
GC_Content 41.20% (G+C)/(A+C+G+T)
N10 15739 10008
N20 11476 25568
N30 8922 46077
N40 7049 72179
N50 5554 105217
N60 4235 147751
N70 3007 205382
N80 1765 293730
N90 428 509432
NG50 NaN NaN
N50_scaffold-NG50_scaffold_length_difference NaN

Information for assembly Contig 'soapdenovo2_sparseGraph.contig'.(cut_off_length < 100bp)

Size_includeN 2051251797
Size_withoutN 2051251797
Contig_Num 3854379
Mean_Size 532
Median_Size 171
Longest_Seq 22512
Shortest_Seq 100
Contig>100 3819222 99.09%
Contig>500 980997 25.45%
Contig>1K 583671 15.14%
Contig>10K 891 0.02%
Contig>100K 0 0.00%
Contig>1M 0 0.00%
Nucleotide_A 616192468 30.04%
Nucleotide_C 432122415 21.07%
Nucleotide_G 415271256 20.24%
Nucleotide_T 587665658 28.65%
GapContent_N 0 0.00%
Non_ACGTN 0 0.00%
GC_Content 41.31% (G+C)/(A+C+G+T)
N10 4396 35101
N20 3142 91078
N30 2400 166140
N40 1860 263478
N50 1425 389550
N60 1048 557252
N70 694 796148
N80 335 1214089
N90 149 2184169
NG50 NaN NaN
N50_contig-NG50_contig_length_difference NaN
Number_of_contigs_in_scaffolds 2236783
Number_of_contigs_not_in_scaffolds(Singleton) 1617596
Average_number_of_contigs_per_scaffold 5.4
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contributors/team_2/run1.txt · Last modified: 2015/09/02 09:18 by ceisenhart