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archive:summer_2015 [2015/06/09 00:28] JaredC created |
archive:summer_2015 [2015/06/09 03:20] chkan |
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====Volunteers==== | ====Volunteers==== | ||
Students continuing to Work in the summer. | Students continuing to Work in the summer. | ||
- | please include a note that briefly describes something you are currently studying | + | please include a note that briefly describes something you are currently studying or doing for the project |
| Name | E-mail | Team | Lab | note | | | Name | E-mail | Team | Lab | note | | ||
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| Siddra H | sihussai@ucsc.edu | ABySS | Green | | | | Siddra H | sihussai@ucsc.edu | ABySS | Green | | | ||
| Emilio F | efeal@ucsc.edu | ABySS | | | | | Emilio F | efeal@ucsc.edu | ABySS | | | | ||
+ | | Charles M | cmarkell@ucsc.edu | SOAP | Haussler | | | ||
+ | | Natasha | ndudek@ucsc.edu | Discovar | Shapiro | I want to work on finishing the mitochondrion assembly | | ||
+ | | Chris Eisenhart | ceisenha@ucsc.edu | Discovar | Browser Group | Get it on the browser, finish the assembly with Sspace. I wont be at the meetings as I have to work, I will correspond over email. | | ||
+ | |Christopher Kan|SGA|Pogson|Will finish SGA Assembly| | ||
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* Meet in PSB 305 (same classroom) | * Meet in PSB 305 (same classroom) | ||
+ | * once a week | ||
+ | * Weds at 10:30am or 1:30pm | ||
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A list of unresolved tasks | A list of unresolved tasks | ||
+ | * distribute T-shirts | ||
* Decide on a final assembly from working assemblers. | * Decide on a final assembly from working assemblers. | ||
* RNA Assembly | * RNA Assembly | ||
* Annotations | * Annotations | ||
* Heterozygosity | * Heterozygosity | ||
+ | * Phylogeny | ||
* Non-slug DNA in reads | * Non-slug DNA in reads | ||
* How to merge assemblies | * How to merge assemblies | ||
* Repeats | * Repeats | ||
* Mitochondria assembly | * Mitochondria assembly | ||
+ | * Use of old data (2010 and 2011 classes) | ||
+ | * Potentially adapt Discovar contigs for SOAPdenovo scaffolding. | ||
====Finished Work==== | ====Finished Work==== | ||
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* Disovar assembly with all shotgun data, accomplished on Kolussus | * Disovar assembly with all shotgun data, accomplished on Kolussus | ||
+ | * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2 |