archive:summer_2015
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archive:summer_2015 [2015/06/09 00:28] JaredC created |
archive:summer_2015 [2015/06/09 01:21] JaredC [Schedule of meetings] |
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| ====Volunteers==== | ====Volunteers==== | ||
| Students continuing to Work in the summer. | Students continuing to Work in the summer. | ||
| - | please include a note that briefly describes something you are currently studying | + | please include a note that briefly describes something you are currently studying or doing for the project |
| | Name | E-mail | Team | Lab | note | | | Name | E-mail | Team | Lab | note | | ||
| Line 9: | Line 9: | ||
| | Siddra H | sihussai@ucsc.edu | ABySS | Green | | | | Siddra H | sihussai@ucsc.edu | ABySS | Green | | | ||
| | Emilio F | efeal@ucsc.edu | ABySS | | | | | Emilio F | efeal@ucsc.edu | ABySS | | | | ||
| + | | Charles M | cmarkell@ucsc.edu | SOAP | Haussler | | | ||
| + | | Natasha | ndudek@ucsc.edu | Discovar | Shapiro | I want to work on finishing the mitochondrion assembly | | ||
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| * Meet in PSB 305 (same classroom) | * Meet in PSB 305 (same classroom) | ||
| + | * once a week | ||
| + | * Weds at 10:30am or 1:30pm | ||
| Line 23: | Line 27: | ||
| A list of unresolved tasks | A list of unresolved tasks | ||
| + | * distribute T-shirts | ||
| * Decide on a final assembly from working assemblers. | * Decide on a final assembly from working assemblers. | ||
| * RNA Assembly | * RNA Assembly | ||
| * Annotations | * Annotations | ||
| * Heterozygosity | * Heterozygosity | ||
| + | * Phylogeny | ||
| * Non-slug DNA in reads | * Non-slug DNA in reads | ||
| * How to merge assemblies | * How to merge assemblies | ||
| * Repeats | * Repeats | ||
| * Mitochondria assembly | * Mitochondria assembly | ||
| + | * Use of old data (2010 and 2011 classes) | ||
| + | * Potentially adapt Discovar contigs for SOAPdenovo scaffolding. | ||
| ====Finished Work==== | ====Finished Work==== | ||
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| * Disovar assembly with all shotgun data, accomplished on Kolussus | * Disovar assembly with all shotgun data, accomplished on Kolussus | ||
| + | * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2 | ||
archive/summer_2015.txt · Last modified: 2015/07/18 20:32 by ceisenhart
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