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======Summer 2015====== ====Volunteers==== Students continuing to Work in the summer. please include a note that briefly describes something you are currently studying or doing for the project | Name | E-mail | Team | Lab | note | | Jared C | jcopher@ucsc.edu | ABySS | Pourmand | Banana Slug Biology and Mollusk genomics | | Siddra H | sihussai@ucsc.edu | ABySS | Green | | | Emilio F | efeal@ucsc.edu | ABySS | | | | Charles M | cmarkell@ucsc.edu | SOAP | Haussler | | | Natasha | ndudek@ucsc.edu | Discovar | Shapiro | I want to work on finishing the mitochondrion assembly | ====Schedule of meetings==== Suggestions for weekly meetings: * Meet in PSB 305 (same classroom) * once a week * Weds at 10:30am or 1:30pm ====Agenda Items==== A list of unresolved tasks * distribute T-shirts * Decide on a final assembly from working assemblers. * RNA Assembly * Annotations * Heterozygosity * Phylogeny * Non-slug DNA in reads * How to merge assemblies * Repeats * Mitochondria assembly * Use of old data (2010 and 2011 classes) * Potentially adapt Discovar contigs for SOAPdenovo scaffolding. ====Finished Work==== A list of work completed sense BME235 ended. * Disovar assembly with all shotgun data, accomplished on Kolussus * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2
