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Summer 2015

Volunteers

Students continuing to Work in the summer. please include a note that briefly describes something you are currently studying or doing for the project

Name E-mail Team Lab note
Jared C jcopher@ucsc.edu ABySS Pourmand Banana Slug Biology and Mollusk genomics
Siddra H sihussai@ucsc.edu ABySS Green
Emilio F efeal@ucsc.edu ABySS
Charles M cmarkell@ucsc.edu SOAP Haussler
Natasha ndudek@ucsc.edu Discovar Shapiro I want to work on finishing the mitochondrion assembly

Schedule of meetings

Suggestions for weekly meetings:

  • Meet in PSB 305 (same classroom)
  • once a week
  • Weds at 10:30am or 1:30pm

Agenda Items

A list of unresolved tasks

  • distribute T-shirts
  • Decide on a final assembly from working assemblers.
  • RNA Assembly
  • Annotations
  • Heterozygosity
  • Phylogeny
  • Non-slug DNA in reads
  • How to merge assemblies
  • Repeats
  • Mitochondria assembly
  • Use of old data (2010 and 2011 classes)
  • Potentially adapt Discovar contigs for SOAPdenovo scaffolding.

Finished Work

A list of work completed sense BME235 ended.

  • Disovar assembly with all shotgun data, accomplished on Kolussus
  • SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2
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archive/summer_2015.1433812884.txt.gz · Last modified: 2015/06/08 18:21 by JaredC