archive:computer_resources:sff_extract
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archive:computer_resources:sff_extract [2010/04/24 09:06] mpcusack |
archive:computer_resources:sff_extract [2015/09/02 16:34] (current) ceisenhart ↷ Page moved from computer_resources:sff_extract to archive:computer_resources:sff_extract |
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| 454 produces data in a binary sff format. Most assemblers (other than newbler) don't read sff directly. Instead they require fasta and fasta.qual data. This software produces both of these as well as a xml file containing clipping information. It can be fed with multiple sff files and produce a single fasta file. | 454 produces data in a binary sff format. Most assemblers (other than newbler) don't read sff directly. Instead they require fasta and fasta.qual data. This software produces both of these as well as a xml file containing clipping information. It can be fed with multiple sff files and produce a single fasta file. | ||
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| + | It seems that sff_extract overlaps in functionality with the Roche-provided sffinfo tool. It is not clear what (if any) advantage there is to the sff_extract tool. I suspect that sffinfo may do a better job of converting flow-space to base space. --- //[[karplus@soe.ucsc.edu|Kevin Karplus]] 2010/04/24 07:59// | ||
archive/computer_resources/sff_extract.1272100015.txt.gz · Last modified: 2010/04/24 09:06 by mpcusack
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