archive:computer_resources:assemblies
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archive:computer_resources:assemblies [2010/04/16 16:40] karplus created |
archive:computer_resources:assemblies [2010/04/20 04:28] karplus added newbler-assembly2/ |
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| ===== Pog/ ===== | ===== Pog/ ===== | ||
| //Pyrobaculum oguniense// assemblies | //Pyrobaculum oguniense// assemblies | ||
| - | * newbler-assembly1/ is an attempt to do a de novo assembly using the 454 tools (Newbler) version 2.3, starting with the entire set of reads (including any contaminants). | + | * newbler-assembly1/ is an attempt to do a de novo assembly using the 454 tools (Newbler) version 2.3, starting with the entire set of reads (including any contaminants). This resulted in 43 contigs and 2449932 bases. |
| - | * newbler-clean1/ does not create an assembly, instead it is an attempt to remove contaminant reads from the Pog 454 data, by removing reads that map to Helicobacter pylori genomes. The results are in newbler-clean1/sff_cleaned/no_Hyp.sff | + | * newbler-clean1/ does not create an assembly, instead it is an attempt to remove contaminant reads from the Pog 454 data, by removing reads that map to //Helicobacter pylori// genomes. The results are in newbler-clean1/sff_cleaned/no_Hyp.sff |
| + | * newbler-assembly2/ is a second de novo assembly using Newbler, starting from the cleaned reads of newbler-clean1/sff_cleaned/no_Hyp.sff | ||
| ===== slug/ ===== | ===== slug/ ===== | ||
archive/computer_resources/assemblies.txt · Last modified: 2015/09/02 16:53 by 92.247.181.31
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