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archive:bioinformatic_tools:sharcgs [2010/04/09 12:10] cbrumbau |
archive:bioinformatic_tools:sharcgs [2015/07/28 06:26] (current) ceisenhart ↷ Page moved from bioinformatic_tools:sharcgs to archive:bioinformatic_tools:sharcgs |
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SHARCGS is a //de novo// DNA assembly program that uses 25-40mers and deep sequence coverage to assemble genomes. | SHARCGS is a //de novo// DNA assembly program that uses 25-40mers and deep sequence coverage to assemble genomes. | ||
+ | It was used for //de novo// sequencing from Solexa sequencing data of //Helicobacter acinonychis//[(cite:SHARCGSHaci>Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, and Heinz Himmelbauer. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. //Nucleic Acids Research// Advance Access published on July 26, 2008, doi:[[http://dx.doi.org/10.1093/nar/gkn425|10.1093/nar/gkn425]])]. | ||
==== Website ==== | ==== Website ==== | ||
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[[http://sharcgs.molgen.mpg.de/download.shtml]] | [[http://sharcgs.molgen.mpg.de/download.shtml]] | ||
- | ===== Publications ===== | ||
- | SHARCGS deployed in a following paper when used for //de novo// sequencing from Solexa sequencing data of //Helicobacter acinonychis//: | ||
- | Juliane C. Dohm , Claudio Lottaz , Tatiana Borodina , and Heinz Himmelbauer. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. //Nucleic Acids Research// Advance Access published on July 26, 2008, doi:[[http://dx.doi.org/10.1093/nar/gkn425|10.1093/nar/gkn425]]. | ||
===== References ===== | ===== References ===== | ||
<refnotes>notes-separator: none</refnotes> | <refnotes>notes-separator: none</refnotes> | ||
~~REFNOTES cite~~ | ~~REFNOTES cite~~ |