archive:bioinformatic_tools:qsra
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archive:bioinformatic_tools:qsra [2010/04/09 13:40] cbrumbau Added citation |
archive:bioinformatic_tools:qsra [2015/07/28 06:27] (current) ceisenhart ↷ Page moved from bioinformatic_tools:qsra to archive:bioinformatic_tools:qsra |
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| QSRA, as the name implies, is a quality value guided //de novo// short read DNA assembler. It builds upon the VCAKE algorithm and assembles faster than VCAKE.[(cite:qrsa)] | QSRA, as the name implies, is a quality value guided //de novo// short read DNA assembler. It builds upon the VCAKE algorithm and assembles faster than VCAKE.[(cite:qrsa)] | ||
| + | |||
| + | ==== Installing ==== | ||
| + | Get the source files and compile QSRA: | ||
| + | |||
| + | <code> | ||
| + | cd /campusdata/BME235/programs | ||
| + | wget http://qsra.cgrb.oregonstate.edu/files/QSRA.tar.gz | ||
| + | tar xfz QSRA.tar.gz | ||
| + | mv QSRA.tar.gz QSRA/ | ||
| + | cd QSRA | ||
| + | make | ||
| + | </code> | ||
| + | |||
| + | Copy the compiled binary to the /campusdata/BME235/bin directory: | ||
| + | |||
| + | <code> | ||
| + | cp qsra /campusdata/BME235/bin/ | ||
| + | </code> | ||
| ==== Website ==== | ==== Website ==== | ||
archive/bioinformatic_tools/qsra.1270820403.txt.gz · Last modified: 2010/04/09 13:40 by cbrumbau
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