This is an old revision of the document!
====== QSRA ====== ===== Overview ===== QSRA[(cite:qrsa>Douglas W Bryant Jr, Weng-Keen Wong, and Todd C Mockler. QSRA – a quality-value guided //de novo// short read assembler. //BMC Bioinformatics// 2009, 10:69, doi:[[http://dx.doi.org/10.1186/1471-2105-10-69|10.1186/1471-2105-10-69]].)] stands for **Q**uality Value Guided **S**hort **R**ead **A**ssembler. QSRA, as the name implies, is a quality value guided //de novo// short read DNA assembler. It builds upon the VCAKE algorithm and assembles faster than VCAKE.[(cite:qrsa)] ==== Website ==== [[http://qsra.cgrb.oregonstate.edu/]] ==== Source and Documentation ==== Source: [[http://qsra.cgrb.oregonstate.edu/files/QSRA.tar.gz]] Documentation (README): [[http://qsra.cgrb.oregonstate.edu/files/readme.txt]] ==== Binaries ==== Linux x86 (presumably 32 bit; not yet tested): [[http://qsra.cgrb.oregonstate.edu/files/qsra]] Note: This is a link to the binary used for the initial publication of QSRA. 4 GB minimum RAM is recommended, as per the README. ===== References ===== <refnotes>notes-separator: none</refnotes> ~~REFNOTES cite~~
