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start [2015/07/27 23:17]
ceisenhart ↷ Links adapted because of a move operation
start [2015/10/06 20:14] (current)
karplus [About the slug] fixed spelling and capitalization of species
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 This project is hosted at UCSC as a graduate class BME235. All information is publicly accessible and free to use, please cite the authors when possible and the wiki as a whole. Please contact [[https://​www.soe.ucsc.edu/​people/​karplus | Kevin Karplus]] with general questions. For questions on specific assemblies please identify the team that created the assembly and email them directly. ​ This project is hosted at UCSC as a graduate class BME235. All information is publicly accessible and free to use, please cite the authors when possible and the wiki as a whole. Please contact [[https://​www.soe.ucsc.edu/​people/​karplus | Kevin Karplus]] with general questions. For questions on specific assemblies please identify the team that created the assembly and email them directly. ​
 ===== About the slug ===== ===== About the slug =====
-//​Ariolimax ​Dolicophallus// is a relatively unstudied species. Here we aim to provide concise and accurate biological information about //​Ariolimax ​Dolicophallus//. +//​Ariolimax ​dolichophallus// is a relatively unstudied species. Here we aim to provide concise and accurate biological information about //​Ariolimax ​dolichophallus//. 
  
-[[About the slug | About the slug ]] +[[about_the_slug:​about_the_slug| ​About the slug ]] 
 + 
 +[[Banana_Slug_Dissection ​Banana Slug Dissection]]
  
 ===== Data ===== ===== Data =====
-Links to the raw [[Data overview ​| data]], as well as processed data are provided [[Data overview ​| here]]. The data includes mate-pair data, raw Illumina reads, and RNA-seq. ​  +Links to the raw [[data_overview:​data_overview| data]], as well as processed data are provided [[data_overview:​data_overview| here]]. The data includes mate-pair data, raw Illumina reads, and RNA-seq. ​  
  
-[[Data overview ​| Data]]+[[data_overview:​data_overview| Data]]
  
  
 ===== Assemblies ===== ===== Assemblies =====
-The [[Assemblies ​| assemblies ]] are available for annotation, merging and other bioinformatics uses.  The assemblies include full nuclear assemblies as well as mitochondrion assemblies. ​+The [[assemblies:​assemblies| assemblies ]] are available for annotation, merging and other bioinformatics uses.  The assemblies include full nuclear assemblies as well as mitochondrion assemblies. ​
  
-[[Assemblies ​| Assemblies ]]+[[assemblies:​assemblies| Assemblies ]]
  
 ===== Post-assembly analysis ===== ===== Post-assembly analysis =====
-Our [[Post-assembly_analysis|analysis]] of the completed assemblies. ​ Includes the [[post-assembly_analysis:​banana_slug_genome_browser|UCSC ​track hub for the banana slug]], analysis of heterozygosity and any annotation ​results+Our [[post-assembly_analysis:​post-assembly_analysis|analysis]] of the completed assemblies. ​ Includes the [[post-assembly_analysis:​banana_slug_genome_browser|UCSC ​assembly ​hub for the banana slug]], analysis of heterozygosity, the [[post-assembly_analysis:​2015:​rna_scaffolding | RNA scaffolding efforts]] ​and any progress made on gene finding/annotation. ​
  
-[[Post-assembly_analysis | Post-assembly analysis ]]+[[post-assembly_analysis:​post-assembly_analysis| Post-assembly analysis ]]
  
  
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 ===== About the class ===== ===== About the class =====
-The project is supported at UCSC as the BME235 Banana Slug Genomics class. ​ More information about the class can be found in the [[About the class | general information]] link. To see which students have worked on the project view the [[about_the_class:​contributors| contributors ]] link.   The budget for the project is publicly viewable using the [[about_the_class:​budget| budget]] link.  Old pages, pages that do not follow the style guide, and pages that cannot be assimilated into the main wiki are archived [[Archive ​| here]]. ​+The project is supported at UCSC as the BME235 Banana Slug Genomics class. ​ More information about the class can be found in the [[about_the_class:​about_the_class| general information]] link. To see which students have worked on the project view the [[contributors:​contributors| contributors ]] link.   The budget for the project is publicly viewable using the [[about_the_class:​budget| budget]] link.  Old pages, pages that do not follow the style guide, and pages that cannot be assimilated into the main wiki are archived [[archive:​archive| here]]. ​
  
-[[About the class | About the class ]] +[[about_the_class:​about_the_class| About the class ]] 
  
-[[about_the_class:​contributors| Contributors]]+[[contributors:​contributors| Contributors]]
  
 [[about_the_class:​budget| Budget]] ​ [[about_the_class:​budget| Budget]] ​
  
-[[Archive ​| Archive]] ​+[[archive:​archive| Archive]] ​
  
 Currently we **are not** accepting donations. Thanks to all our past donors! Currently we **are not** accepting donations. Thanks to all our past donors!
start.1438064249.txt.gz · Last modified: 2015/07/27 23:17 by ceisenhart