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start [2015/07/15 20:05] ceisenhart [About the slug] |
start [2015/07/18 20:22] ceisenhart [Assemblies] |
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| ===== Data ===== | ===== Data ===== | ||
| - | Links to the raw data, as well as processed data is provided [[Data overview | here]] | + | Links to the raw [[Data overview | data]], as well as processed data are provided [[Data overview | here]]. The data includes mate-pair data, raw Illumina reads, and RNA-seq. |
| - | [[Data overview | Access to the raw and processed data]] | + | [[Data overview | Data]] |
| ===== Assemblies ===== | ===== Assemblies ===== | ||
| - | The assemblies are available for annotation, merging and other bioinformatics uses. | + | The [[Assemblies | assemblies ]] are available for annotation, merging and other bioinformatics uses. The assemblies include full nuclear assemblies as well as mitochondrion assemblies. |
| - | [[Full_genome_assemblies | Full genome assemblies ]] | + | [[Assemblies | Assemblies ]] |
| - | + | ||
| - | [[Mitochondrion_assemblies | Mitochondrion assemblies ]] | + | |
| ===== Post-assembly analysis ===== | ===== Post-assembly analysis ===== | ||
| - | Our analysis of the completed assemblies. Includes the [[Banana slug genome browser |UCSC track hub for the banana slug]], analysis of heterozygosity, annotation results, and [[Euchromatin and Heterochromatin | analysis of banana slug euchromatin and heterochromatin]]. | + | Our [[Post-assembly_analysis|analysis]] of the completed assemblies. Includes the [[Banana slug genome browser |UCSC track hub for the banana slug]], analysis of heterozygosity and any annotation results. |
| - | + | ||
| - | [[Banana slug genome browser] | UCSC Genome Browser Banana slug track hub]] | + | |
| - | [[Euchromatin and Heterochromatin | Banana slug euchromatin and heterochromatin]] | + | [[Post-assembly_analysis | Post-assembly analysis ]] |
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| ===== About the class ===== | ===== About the class ===== | ||
| - | The project is supported at UCSC as the BME235 Banana Slug Genomics class. More information about the class can be found in the [[About the class | general information]] link. To see which students have worked on the project view the [[Students | students ]] link. The budget for the project is publicly viewable using the [[Budget | budget]] link. Old pages, pages that do not follow the style guide, and pages that cannot be assimilated into the main wiki are archived [[Archive | here]]. | + | The project is supported at UCSC as the BME235 Banana Slug Genomics class. More information about the class can be found in the [[About the class | general information]] link. To see which students have worked on the project view the [[Contributors | contributors ]] link. The budget for the project is publicly viewable using the [[Budget | budget]] link. Old pages, pages that do not follow the style guide, and pages that cannot be assimilated into the main wiki are archived [[Archive | here]]. |
| [[About the class | General information ]] | [[About the class | General information ]] | ||
| - | [[Students | Students ]] | + | [[Contributors | Contributors]] |
| [[Budget | Budget]] | [[Budget | Budget]] | ||
| Line 51: | Line 47: | ||
| [[Archive | Archive]] | [[Archive | Archive]] | ||
| - | Currently we **are not** accepting donations. Thanks to all our current and previous donors! | + | Currently we **are not** accepting donations. Thanks to all our past donors! |
| ---- | ---- | ||
start.txt · Last modified: 2015/10/07 03:14 by karplus
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