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start [2015/07/15 19:26] ceisenhart Major changes under way, please let me finish before doing more |
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| This project is hosted at UCSC as a graduate class BME235. All information is publicly accessible and free to use, please cite the authors when possible and the wiki as a whole. Please contact [[https://www.soe.ucsc.edu/people/karplus | Kevin Karplus]] with general questions. For questions on specific assemblies please identify the team that created the assembly and email them directly. | This project is hosted at UCSC as a graduate class BME235. All information is publicly accessible and free to use, please cite the authors when possible and the wiki as a whole. Please contact [[https://www.soe.ucsc.edu/people/karplus | Kevin Karplus]] with general questions. For questions on specific assemblies please identify the team that created the assembly and email them directly. | ||
| ===== About the slug ===== | ===== About the slug ===== | ||
| + | //Ariolimax Dolicophallus// is a relatively unstudied species. Here we aim to provide concise and accurate biological information about //Ariolimax Dolicophallus//. | ||
| + | |||
| + | [[About the slug | About the slug ]] | ||
| + | |||
| + | ===== Data ===== | ||
| + | Links to the raw [[Data overview | data]], as well as processed data are provided [[Data overview | here]]. The data includes mate-pair data, raw Illumina reads, and RNA-seq. | ||
| + | |||
| + | [[Data overview | Data]] | ||
| - | [[About the slug | Biological information about the slug ]] | ||
| ===== Assemblies ===== | ===== Assemblies ===== | ||
| + | The [[Assemblies | assemblies ]] are available for annotation, merging and other bioinformatics uses. The assemblies include full nuclear assemblies as well as mitochondrion assemblies. | ||
| + | |||
| + | [[Assemblies | Assemblies ]] | ||
| + | |||
| + | ===== Post-assembly analysis ===== | ||
| + | Our [[Post-assembly_analysis|analysis]] of the completed assemblies. Includes the [[post-assembly_analysis:banana_slug_genome_browser|UCSC track hub for the banana slug]], analysis of heterozygosity and any annotation results. | ||
| + | |||
| + | [[Post-assembly_analysis | Post-assembly analysis ]] | ||
| - | [[Full_genome_assemblies | Full genome assemblies ]] | ||
| - | [[Mitochondrion_assemblies | Mitochondrion assemblies ]] | ||
| - | ===== Data ===== | ||
| - | [[Data overview | Access to the raw and processed data]] | ||
| ===== About the class ===== | ===== About the class ===== | ||
| + | The project is supported at UCSC as the BME235 Banana Slug Genomics class. More information about the class can be found in the [[About the class | general information]] link. To see which students have worked on the project view the [[about_the_class:contributors| contributors ]] link. The budget for the project is publicly viewable using the [[about_the_class:budget| budget]] link. Old pages, pages that do not follow the style guide, and pages that cannot be assimilated into the main wiki are archived [[Archive | here]]. | ||
| - | [[About the class | General information about the class and wiki ]] | + | [[About the class | About the class ]] |
| - | [[Teams | Team pages ]] | + | [[about_the_class:contributors| Contributors]] |
| - | [[Budget | The budget for our project]] | + | [[about_the_class:budget| Budget]] |
| [[Archive | Archive]] | [[Archive | Archive]] | ||
| - | Currently we **are not** accepting donations. Thanks to all our current and previous donors! | + | Currently we **are not** accepting donations. Thanks to all our past donors! |
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start.txt · Last modified: 2015/10/07 03:14 by karplus
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Noncommercial-Share Alike 3.0 Unported
