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start [2015/05/27 06:02] nsaremi soap run 3 |
start [2015/06/08 22:54] ceisenhart [Team pages and results] |
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| * [[Lecture notes]] will have pointers to notes taken by the students for each lecture. Two students will be designated each lecture to take notes, but others are encouraged to add their own notes to the wiki pages. | * [[Lecture notes]] will have pointers to notes taken by the students for each lecture. Two students will be designated each lecture to take notes, but others are encouraged to add their own notes to the wiki pages. | ||
| * [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is. Prior mollusk genomes may be very useful in annotating the banana slug. | * [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is. Prior mollusk genomes may be very useful in annotating the banana slug. | ||
| - | * [[RNA]] | ||
| * [[Euchromatin and Heterochromatin]] | * [[Euchromatin and Heterochromatin]] | ||
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| | Team page | Contig N50 | Scaffold N50 | Total bases | Path | | | Team page | Contig N50 | Scaffold N50 | Total bases | Path | | ||
| |[[team_1_page| Meraculous: Team 1 page]]| N/A | N/A | N/A | N/A | | |[[team_1_page| Meraculous: Team 1 page]]| N/A | N/A | N/A | N/A | | ||
| - | |[[soapdenovo2|SOAP: Team 2 page]]| 1,388 | 12,629 | 2,140,710,711 | SOAPdenovo2/assemblyTask/SOAPdenovo2_run3_all/soapdenovo2_allAssembly_1.scafSeq| | + | |[[soapdenovo2|SOAP: Team 2 page]]| 8,033 | 11,000 | 2,293,889,058 (non gap approx) | SOAPdenovo2/assemblyTask/SOAPdenovo2_run3_all/soapdenovo2_allAssembly_1.scafSeq.gapclosed| |
| - | |[[0.10.13|SGA: Team 3 page]]| | | + | |[[0.10.13|SGA: Team 3 page]]| N/A | N/A | N/A | N/A | |
| |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | 2,446,362,204| | |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | 2,446,362,204| | ||
| - | |[[team_5_page| Discovar de novo: Team 5 page]]| **9,513** | **10,634** | 2,245,788,654 | DiscovarDeNovo/firstFullRun/discovarDeNovoAssembly.fasta | | + | |[[team_5_page| Discovar de novo: Team 5 page]]| 10,427 | 12,549 | 2,395,797,282 | DiscovarDeNovo/KolossusAssembly/discovarDeNovoKolossusAssembly.fasta | |
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| ===== Old pages of this wiki ===== | ===== Old pages of this wiki ===== | ||
| - | These links are several years old. Due to the speed in which bioinformatics moves, most if not all of this information will be outdated. | + | These links are several years old. Due to the speed in which bioinformatics moves, most if not all of this information will be outdated. |
| + | * [[RNA]] | ||
| * [[computer_resources:data|Data available]] lists the datasets that we have to assemble and annotate the genome. The data will not appear on the wiki itself (due to the size of the files), but descriptions of it and pointers to the files will. | * [[computer_resources:data|Data available]] lists the datasets that we have to assemble and annotate the genome. The data will not appear on the wiki itself (due to the size of the files), but descriptions of it and pointers to the files will. | ||
| * [[computer_resources:assemblies|Assemblies]] lists the attempted assemblies (separated into subdirectories by organism). | * [[computer_resources:assemblies|Assemblies]] lists the attempted assemblies (separated into subdirectories by organism). | ||
start.txt · Last modified: 2015/10/07 03:14 by karplus
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