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start [2015/05/22 02:41] ceisenhart [Team pages and results] Discovar takes the lead! |
start [2015/05/29 22:16] nsaremi gap closed update |
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| [[mitochondrion_2015 | 2015 Mitochondrion assembly ]] | [[mitochondrion_2015 | 2015 Mitochondrion assembly ]] | ||
| - | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. | + | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. The assemblies are in the /campusdata/BME235/S15_assemblies/ folder on the campusrocks server. |
| - | | Team page | Contig N50 | Scaffold N50 | Total bases | | + | | Team page | Contig N50 | Scaffold N50 | Total bases | Path | |
| - | |[[team_1_page| Meraculous: Team 1 page]]| | | | + | |[[team_1_page| Meraculous: Team 1 page]]| N/A | N/A | N/A | N/A | |
| - | |[[soapdenovo2|SOAP: Team 2 page]]| 1,425 | 9,501 | 1,966,097,910 | | + | |[[soapdenovo2|SOAP: Team 2 page]]| 8,033 | 11,000 | 2,140,710,711 (non gap closed approx) | SOAPdenovo2/assemblyTask/SOAPdenovo2_allAssembly_1/soapdenovo2_allAssembly_1.scafSeq.gapclosed| |
| - | |[[0.10.13|SGA: Team 3 page]]| | | + | |[[0.10.13|SGA: Team 3 page]]| N/A | N/A | N/A | N/A | |
| |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | 2,446,362,204| | |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | 2,446,362,204| | ||
| - | |[[team_5_page| Discovar de novo: Team 5 page]]| **9,513** | **10,634** | 2,245,788,654 | | + | |[[team_5_page| Discovar de novo: Team 5 page]]| 9,513 | 10,634 | 2,245,788,654 | DiscovarDeNovo/firstFullRun/discovarDeNovoAssembly.fasta | |
start.txt · Last modified: 2015/10/07 03:14 by karplus
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