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Differences
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start [2015/05/17 20:04] ceisenhart [Team pages and results] Moved the mitochondrion results out of the team results table. |
start [2015/05/27 01:21] jennie [Team pages and results] |
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| * [[Euchromatin and Heterochromatin]] | * [[Euchromatin and Heterochromatin]] | ||
| - | ====Team pages and results ==== | + | =====Team pages and results ===== |
| The mitochondrion for the banana slug was assembled! | The mitochondrion for the banana slug was assembled! | ||
| [[mitochondrion_2015 | 2015 Mitochondrion assembly ]] | [[mitochondrion_2015 | 2015 Mitochondrion assembly ]] | ||
| - | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. | + | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. The assemblies are in the /campusdata/BME235/S15_assemblies/ folder on the campusrocks server. |
| - | | Team page | Contig N50 | Scaffold N50 | Total bases | | + | | Team page | Contig N50 | Scaffold N50 | Total bases | Path | |
| - | |[[team_1_page| Meraculous: Team 1 page]]| | | | + | |[[team_1_page| Meraculous: Team 1 page]]| N/A | N/A | N/A | N/A | |
| - | |[[soapdenovo2|SOAP: Team 2 page]]| 1,425 | **9,501** | 1,966,097,910 | | + | |[[soapdenovo2|SOAP: Team 2 page]]| 1,425 | 9,501 | 2,385,757,551 | SOAPdenovo2/assemblyTask/SOAPdenovo2_run2/soapdenovo2_sparseGraph_2.scafSeq| |
| |[[0.10.13|SGA: Team 3 page]]| | | |[[0.10.13|SGA: Team 3 page]]| | | ||
| - | |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | ~1,573,000,000| | + | |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | 2,446,362,204| |
| - | |[[team_5_page| Discovar de novo: Team 5 page]]| **3,979** | 3,979 | 1,839,371,352 | | + | |[[team_5_page| Discovar de novo: Team 5 page]]| **9,513** | **10,634** | 2,245,788,654 | DiscovarDeNovo/firstFullRun/discovarDeNovoAssembly.fasta | |
start.txt · Last modified: 2015/10/07 03:14 by karplus
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