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start [2015/05/16 02:50] ceisenhart |
start [2015/05/30 01:08] charles |
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| * [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is. Prior mollusk genomes may be very useful in annotating the banana slug. | * [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is. Prior mollusk genomes may be very useful in annotating the banana slug. | ||
| * [[RNA]] | * [[RNA]] | ||
| + | * [[Euchromatin and Heterochromatin]] | ||
| ====Team pages and results ==== | ====Team pages and results ==== | ||
| - | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. | + | The mitochondrion for the banana slug was assembled! |
| - | | Team page | Contig N50 | Scaffold N50 | Total bases | | + | |
| - | |[[team_1_page| Meraculous: Team 1 page]]| | | | + | [[mitochondrion_2015 | 2015 Mitochondrion assembly ]] |
| - | |[[soapdenovo2|SOAP: Team 2 page]]| 1,425 | **5,554** | 1,974,393,478 | | + | |
| - | |[[0.10.13|SGA: Team 3 page]]| | | + | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. The assemblies are in the /campusdata/BME235/S15_assemblies/ folder on the campusrocks server. |
| - | |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | ~1,573,000,000| | + | | Team page | Contig N50 | Scaffold N50 | Total bases | Path | |
| - | |[[team_5_page| Discovar de novo: Team 5 page]]| **3,979** | 3,979 | 1,839,371,352 | | + | |[[team_1_page| Meraculous: Team 1 page]]| N/A | N/A | N/A | N/A | |
| + | |[[soapdenovo2|SOAP: Team 2 page]]| 8,033 | 11,000 | 2,293,889,058 (non gap approx) | SOAPdenovo2/assemblyTask/SOAPdenovo2_run3_all/soapdenovo2_allAssembly_1.scafSeq.gapclosed| | ||
| + | |[[0.10.13|SGA: Team 3 page]]| N/A | N/A | N/A | N/A | | ||
| + | |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | 2,446,362,204| | ||
| + | |[[team_5_page| Discovar de novo: Team 5 page]]| 9,513 | 10,634 | 2,245,788,654 | DiscovarDeNovo/firstFullRun/discovarDeNovoAssembly.fasta | | ||
start.txt · Last modified: 2015/10/07 03:14 by karplus
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