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start [2015/05/16 02:43] karplus added Abyss stats |
start [2015/05/27 01:22] jennie [Team pages and results] |
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* [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is. Prior mollusk genomes may be very useful in annotating the banana slug. | * [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is. Prior mollusk genomes may be very useful in annotating the banana slug. | ||
* [[RNA]] | * [[RNA]] | ||
+ | * [[Euchromatin and Heterochromatin]] | ||
====Team pages and results ==== | ====Team pages and results ==== | ||
- | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. | + | The mitochondrion for the banana slug was assembled! |
- | | Team page | Contig N50 | Scaffold N50 | Total bases | | + | |
- | |[[team_1_page| Meraculous: Team 1 page]]| | | | + | [[mitochondrion_2015 | 2015 Mitochondrion assembly ]] |
- | |[[soapdenovo2|SOAPdenovo2: Team 2 page]]| 1,425 | **5,554** | 1,974,393,478 | | + | |
+ | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. The assemblies are in the /campusdata/BME235/S15_assemblies/ folder on the campusrocks server. | ||
+ | | Team page | Contig N50 | Scaffold N50 | Total bases | Path | | ||
+ | |[[team_1_page| Meraculous: Team 1 page]]| N/A | N/A | N/A | N/A | | ||
+ | |[[soapdenovo2|SOAP: Team 2 page]]| 1,425 | 9,501 | 2,385,757,551 | SOAPdenovo2/assemblyTask/SOAPdenovo2_run2/soapdenovo2_sparseGraph_2.scafSeq| | ||
|[[0.10.13|SGA: Team 3 page]]| | | |[[0.10.13|SGA: Team 3 page]]| | | ||
- | |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | ~1,573,000,000| | + | |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | 2,446,362,204| |
- | |[[team_5_page| Discovar de novo: Team 5 page]]| **3,979** | 3,979 | ~3,284,400,000 ?| | + | |[[team_5_page| Discovar de novo: Team 5 page]]| **9,513** | **10,634** | 2,245,788,654 | DiscovarDeNovo/firstFullRun/discovarDeNovoAssembly.fasta | |