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start [2015/05/16 02:36] karplus added extra column for total bases in assembly |
start [2015/05/17 20:04] ceisenhart [Team pages and results] Moved the mitochondrion results out of the team results table. |
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* [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is. Prior mollusk genomes may be very useful in annotating the banana slug. | * [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is. Prior mollusk genomes may be very useful in annotating the banana slug. | ||
* [[RNA]] | * [[RNA]] | ||
+ | * [[Euchromatin and Heterochromatin]] | ||
====Team pages and results ==== | ====Team pages and results ==== | ||
+ | The mitochondrion for the banana slug was assembled! | ||
+ | |||
+ | [[mitochondrion_2015 | 2015 Mitochondrion assembly ]] | ||
+ | |||
Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. | ||
| Team page | Contig N50 | Scaffold N50 | Total bases | | | Team page | Contig N50 | Scaffold N50 | Total bases | | ||
|[[team_1_page| Meraculous: Team 1 page]]| | | | |[[team_1_page| Meraculous: Team 1 page]]| | | | ||
- | |[[soapdenovo2|SOAPdenovo2: Team 2 page]]| 1,425 | **5,554** | | | + | |[[soapdenovo2|SOAP: Team 2 page]]| 1,425 | **9,501** | 1,966,097,910 | |
|[[0.10.13|SGA: Team 3 page]]| | | |[[0.10.13|SGA: Team 3 page]]| | | ||
- | |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | | | + | |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | ~1,573,000,000| |
- | |[[team_5_page| Discovar de novo: Team 5 page]]| **3,979** | 3,979 | | | + | |[[team_5_page| Discovar de novo: Team 5 page]]| **3,979** | 3,979 | 1,839,371,352 | |