start
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
|
start [2015/05/08 17:44] gepoliano |
start [2015/05/18 17:09] ceisenhart [Team pages and results] |
||
|---|---|---|---|
| Line 11: | Line 11: | ||
| * [[computer_resources:campusrocks|Complete guide to campusRocks and SGE]] | * [[computer_resources:campusrocks|Complete guide to campusRocks and SGE]] | ||
| * [[Budget]] | * [[Budget]] | ||
| - | * [[RNA]] | + | * [[Specific task]] |
| - | * [[Specific Task]] | + | * [[Banana slug genome browser]] A guide for accessing and setting up the banana slug hub. |
| ===== Important pages of this wiki ===== | ===== Important pages of this wiki ===== | ||
| * [[Computer resources]] describes the computers and file systems available for this class, how to get an account, how the directories are organized, how to get file permissions set correctly, and so forth. | * [[Computer resources]] describes the computers and file systems available for this class, how to get an account, how the directories are organized, how to get file permissions set correctly, and so forth. | ||
| - | * [[Banana Slug Genome Browser]] will have a UCSC genome browser, once we get to the point of having few enough contigs that building a browser makes sense. | ||
| * [[Style guide]] will have suggestions for organizing content on the wiki. | * [[Style guide]] will have suggestions for organizing content on the wiki. | ||
| * [[Lecture notes]] will have pointers to notes taken by the students for each lecture. Two students will be designated each lecture to take notes, but others are encouraged to add their own notes to the wiki pages. | * [[Lecture notes]] will have pointers to notes taken by the students for each lecture. Two students will be designated each lecture to take notes, but others are encouraged to add their own notes to the wiki pages. | ||
| * [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is. Prior mollusk genomes may be very useful in annotating the banana slug. | * [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is. Prior mollusk genomes may be very useful in annotating the banana slug. | ||
| + | * [[RNA]] | ||
| + | * [[Euchromatin and Heterochromatin]] | ||
| ====Team pages and results ==== | ====Team pages and results ==== | ||
| - | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. | + | The mitochondrion for the banana slug was assembled! |
| - | [[team_1_page| Meraculous: Team 1 page]] | + | [[mitochondrion_2015 | 2015 Mitochondrion assembly ]] |
| - | [[soapdenovo2|SOAPdenovo2: Team 2 page]] | + | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. |
| - | + | | Team page | Contig N50 | Scaffold N50 | Total bases | | |
| - | [[team_4_page| ABySS: Team 4 page]] | + | |[[team_1_page| Meraculous: Team 1 page]]| | | |
| - | + | |[[soapdenovo2|SOAP: Team 2 page]]| 1,425 | **9,501** | 1,966,097,910 | | |
| - | [[team_5_page| Discovar de novo: Team 5 page]] | + | |[[0.10.13|SGA: Team 3 page]]| | |
| + | |[[team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | 2,446,362,204| | ||
| + | |[[team_5_page| Discovar de novo: Team 5 page]]| **3,979** | 3,979 | 1,839,371,352 | | ||
start.txt · Last modified: 2015/10/07 03:14 by karplus
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Noncommercial-Share Alike 3.0 Unported
