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start [2015/04/15 21:14] ceisenhart vetted 'Other mollusk genomes' then moved it to important links |
start [2015/05/13 20:42] ceisenhart [Team pages and results] Added a link to team 3 page for completeness |
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| - | ====== Banana Slug Genomics ====== | + | ====== Banana slug genomics ====== |
| ===== Reborn - Spring 2015 ===== | ===== Reborn - Spring 2015 ===== | ||
| Welcome back, Banana Slug Genomics! Following the successful [[https://crowdfund.ucsc.edu/project/5424db950920652635292bae|crowdfunding campaign]], this class and effort will be rebooted. | Welcome back, Banana Slug Genomics! Following the successful [[https://crowdfund.ucsc.edu/project/5424db950920652635292bae|crowdfunding campaign]], this class and effort will be rebooted. | ||
| - | * [[Spring 2015 Syllabus]] The lecture schedule and registered note takers. | + | * [[Spring 2015 syllabus]] The lecture schedule and registered note takers. |
| * [[Data overview]] Raw data and associated analysis. | * [[Data overview]] Raw data and associated analysis. | ||
| * [[Teams]] Each team is attempting an assembly with a different program. | * [[Teams]] Each team is attempting an assembly with a different program. | ||
| * [[Style Guide|Complete guide for modifying the wiki]] | * [[Style Guide|Complete guide for modifying the wiki]] | ||
| * [[computer_resources:campusrocks|Complete guide to campusRocks and SGE]] | * [[computer_resources:campusrocks|Complete guide to campusRocks and SGE]] | ||
| + | * [[Budget]] | ||
| + | * [[RNA]] | ||
| + | * [[Specific Task]] | ||
| ===== Important pages of this wiki ===== | ===== Important pages of this wiki ===== | ||
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| * [[Lecture notes]] will have pointers to notes taken by the students for each lecture. Two students will be designated each lecture to take notes, but others are encouraged to add their own notes to the wiki pages. | * [[Lecture notes]] will have pointers to notes taken by the students for each lecture. Two students will be designated each lecture to take notes, but others are encouraged to add their own notes to the wiki pages. | ||
| * [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is. Prior mollusk genomes may be very useful in annotating the banana slug. | * [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is. Prior mollusk genomes may be very useful in annotating the banana slug. | ||
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| + | ====Team pages and results ==== | ||
| + | Each team is attempting to assemble the banana slug genome with a different assembly program. The results are posted in the team pages below. | ||
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| + | [[team_1_page| Meraculous: Team 1 page]] | ||
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| + | [[soapdenovo2|SOAPdenovo2: Team 2 page]] | ||
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| + | [[0.10.13|SGA: Team 3 page]] | ||
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| + | [[team_4_page| ABySS: Team 4 page]] | ||
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| + | [[team_5_page| Discovar de novo: Team 5 page]] | ||
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start.txt ยท Last modified: 2015/10/07 03:14 by karplus
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