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--- post-assembly_analysis:banana_slug_genome_browser [2015/05/16 03:22]
ceisenhart [Banana slug genome browser]
+++ post-assembly_analysis:banana_slug_genome_browser [2015/07/16 18:11]
ceisenhart
@@ Line 1: / Line 1: @@
-=====Banana slug genome browser=====
+======Banana slug genome browser======
-Currently the banana slug genome is supported as a private track hub.
+Currently the banana slug genome is supported as a private track hub. For those who know how to set up custom track hubs, the link is here. **If it is your first time setting up a custom track hub, follow the instructions for 'Mounting the banana slug track hub' below!**
 http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt
-The entire Ariolimax dolichophallus mitochondrial genome seems to be up on the browser in three contigs! Hopefully tracks will be made soon.
+Currently the following assemblies are supported;
-The data on the browser is in a VERY EARLY FORMAT. Currently only the 30 longest contig's for each group are supported on the browser.  The contigs are re-named before uploading, and can be viewed by using the 'sequences' button on the browser. Contact Chris Eisenhart to have your team's data put on the browser (ceisenhart@soe.ucsc.edu). Currently the following assemblies are supported;
+ABySS
 SOAP
@@ Line 15: / Line 15: @@
-==== Setup and viewing ====
+===== Mounting the banana slug track hub =====
 To view the banana slug data please go to
@@ Line 32: / Line 32: @@
 http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt
-into the 'URL' text box and click the 'Add hub' button.  You will be redirected to the banana slug hub.
+into the 'URL' text box and click the 'Add hub' button.  You will be redirected to the banana slug hub which can be used as normal.
+=====Creating a new track hub=====
+To setup a custom track hub follow the instructions here.
+**Note the banana slug track hub has already been created.** These are the instructions that were used to create it the first time, it can be accessed using the instructions above.
+https://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html

Banana Slug Genomics

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