post-assembly_analysis:banana_slug_genome_browser
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post-assembly_analysis:banana_slug_genome_browser [2010/03/31 02:22] galt |
post-assembly_analysis:banana_slug_genome_browser [2015/05/15 19:17] ceisenhart Updated to 2015 |
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| - | * [[http://bananadev.cse.ucsc.edu/|Banana Slug Genome Browser]] will have a UCSC genome browser, once we get to the point of having few enough contigs that building a browser makes sense. | + | =====Banana slug genome browser===== |
| - | * [[http://genome.ucsc.edu/admin/mirror.html|Mirroring the UCSC Genome Browser]] shows procedures for setting up a mirror site. | + | Currently the banana slug genome is supported as a private track hub. |
| - | * [[http://genomewiki.ucsc.edu/index.php/Minimal_Browser_Installation|Minimal Browser Install]] instructions are on the ucsc genomewiki. | + | |
| - | * [[http://hgdownload.cse.ucsc.edu/admin/jksrc.zip|Source Code]] provides kent source zip. | + | http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt |
| - | * kent/src/product/README* has documentation on configuring and using the UCSC Genome Browser. | + | |
| - | * Internally, the Browser staff uses makeGenome.pl to automate much of the initial build of a browser for a new assembly. The kent source contains that script and other scripts that it calls. | + | To view the banana slug data please go to |
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| + | https://genome.ucsc.edu/cgi-bin/hgGateway | ||
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| + | and click the 'track hubs' button | ||
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| + | {{ ::firstbrowsershot.png |}} | ||
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| + | next navigate to the 'my hubs' tab | ||
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| + | {{ ::secondbrowsershot.png |}} | ||
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| + | Paste the url provided, | ||
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| + | http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt | ||
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| + | into the 'URL' text box and click the 'Add hub' button. You will be redirected to the banana slug hub. | ||
post-assembly_analysis/banana_slug_genome_browser.txt · Last modified: 2015/07/28 06:05 by ceisenhart
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